Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W133 Cluster: CG3608-PA; n=6; Endopterygota|Rep: CG36...    35   2.7  
UniRef50_Q63502 Cluster: ORF1 protein; n=6; Eukaryota|Rep: ORF1 ...    33   6.2  

>UniRef50_Q9W133 Cluster: CG3608-PA; n=6; Endopterygota|Rep:
           CG3608-PA - Drosophila melanogaster (Fruit fly)
          Length = 518

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 788 RMCGFVVMSKCCIQSAYREEINKE 717
           RM  F VMSKCC+QS+Y E+  K+
Sbjct: 451 RMTAFWVMSKCCVQSSYAEQRAKQ 474


>UniRef50_Q63502 Cluster: ORF1 protein; n=6; Eukaryota|Rep: ORF1
           protein - Rattus norvegicus (Rat)
          Length = 189

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +2

Query: 503 TAISYPKKFTYIILYKYAYKISQFSLHI*ALERMFFIKLMYHINLNI 643
           +A+S+P    +I+ +K+ Y +S FSL+       FFI  +  ++L+I
Sbjct: 99  SAMSFPLSTAFIVSHKFGYVVSSFSLNSKKFLISFFISSLTRLSLSI 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,177,854
Number of Sequences: 1657284
Number of extensions: 11314519
Number of successful extensions: 25197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25180
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)