Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    25   0.69 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    25   0.69 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   6.5  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   6.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   8.5  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 333 ITSLQDDTSFVMVVYFFNRSKLRFYF 256
           I S Q+DT  ++V+Y FN   L F F
Sbjct: 303 IRSRQEDTDTLVVIYTFNLFYLCFCF 328


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 333 ITSLQDDTSFVMVVYFFNRSKLRFYF 256
           I S Q+DT  ++V+Y FN   L F F
Sbjct: 259 IRSRQEDTDTLVVIYTFNLFYLCFCF 284


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 469 NKLVYTCNKRYNCVLKLIIKMLRCLYVFVLMFFNQN 362
           +KLV   N+ +  VL L+  +   + V  + FF  N
Sbjct: 513 SKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTAN 548


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 469 NKLVYTCNKRYNCVLKLIIKMLRCLYVFVLMFFNQN 362
           +KLV   N+ +  VL L+  +   + V  + FF  N
Sbjct: 238 SKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTAN 273


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 732 FSICALYAAFAHYNKTTHSL 791
           F++C L+A   +YN    SL
Sbjct: 15  FAVCRLFALVPYYNFEKFSL 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,125
Number of Sequences: 336
Number of extensions: 3680
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)