Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   3.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   5.4  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    25   9.4  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 373 KTLEQIHTSTLTFLLLI*EHNYTFYYMCKLIYYFYTIFDLTLENSNKLP*KVYLHHFI 546
           +T  +I    L  +L +   N+ F+Y+C+   YFY   +   E  ++ P  +  HH +
Sbjct: 18  QTNTEILLFALVIILSVIFINFFFFYLCRCCVYFYHTLE-NQEGDDERP--LIQHHMV 72


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 257 LYNDLYVDSYVYFFPFSSRSL 195
           L   L++DSY +FFP + RSL
Sbjct: 516 LQESLHLDSYGFFFPNAERSL 536


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 720 FVNFFSICALYAAFAHYNKT 779
           ++N +SIC LY+ F    KT
Sbjct: 148 YLNLYSICVLYSTFVAITKT 167


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 746 FVCSICSLQQNHTFS 790
           F C++C+ + NH FS
Sbjct: 80  FTCTVCNTRSNHNFS 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,656
Number of Sequences: 5004
Number of extensions: 55488
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)