Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460...    31   0.79 
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   9.8  

>03_05_1030 -
           29844628-29845059,29845161-29845245,29845989-29846087,
           29846478-29846566,29847583-29847633
          Length = 251

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 91  IQHWLERIQITQL-CIR*NLQTINYLKKNCCLCITDRDREENGK 219
           +++W  R+    L C R NL+T+ YL +N  L +   D + NGK
Sbjct: 31  VRNWECRLACAVLECHRFNLETVQYLDENKQLILAILDNQNNGK 74


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 688  FKYCLLNIDFSLLISSLYALCMQHLLITT 774
            FK+  L I+FSL    LY  C++ L IT+
Sbjct: 1854 FKFTSLGINFSLSEEILYLSCLEELNITS 1882


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,169
Number of Sequences: 37544
Number of extensions: 255718
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)