Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000181-1|AAH00181.1|  338|Homo sapiens G protein-coupled recep...    31   6.3  
AJ249248-1|CAB55314.1|  338|Homo sapiens putative G protein-coup...    31   6.3  
AB083583-1|BAB89296.1|  338|Homo sapiens putative G-protein coup...    31   6.3  

>BC000181-1|AAH00181.1|  338|Homo sapiens G protein-coupled receptor
           160 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 242 YVDSYVYFFPFSSRSLSVIHRQQFFFK*LIVC 147
           Y++  + +FPFSS S   +  ++ F   LIVC
Sbjct: 216 YMNETILYFPFSSHSSYTVRSKKIFLSKLIVC 247


>AJ249248-1|CAB55314.1|  338|Homo sapiens putative G protein-coupled
           Receptor protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 242 YVDSYVYFFPFSSRSLSVIHRQQFFFK*LIVC 147
           Y++  + +FPFSS S   +  ++ F   LIVC
Sbjct: 216 YMNETILYFPFSSHSSYTVRSKKIFLSKLIVC 247


>AB083583-1|BAB89296.1|  338|Homo sapiens putative G-protein coupled
           receptor protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 242 YVDSYVYFFPFSSRSLSVIHRQQFFFK*LIVC 147
           Y++  + +FPFSS S   +  ++ F   LIVC
Sbjct: 216 YMNETILYFPFSSHSSYTVRSKKIFLSKLIVC 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,029,612
Number of Sequences: 237096
Number of extensions: 1684754
Number of successful extensions: 2420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)