Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17o08
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006660-3|AAM69102.1|  346|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006660-2|AAZ91346.1|  348|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006660-1|AAM69103.2|  368|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   8.8  

>AC006660-3|AAM69102.1|  346|Caenorhabditis elegans Hypothetical
           protein H18N23.2a protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 586 IGFRKNVF--YKIN--VSHKFKYTLYK*STSMVQLNFKF 690
           I F K+VF  Y +N  +S+  K  +Y+ STS +Q  FKF
Sbjct: 216 IAFEKSVFVRYTMNGWISYMDKAAIYQPSTSKIQDTFKF 254


>AC006660-2|AAZ91346.1|  348|Caenorhabditis elegans Hypothetical
           protein H18N23.2c protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 586 IGFRKNVF--YKIN--VSHKFKYTLYK*STSMVQLNFKF 690
           I F K+VF  Y +N  +S+  K  +Y+ STS +Q  FKF
Sbjct: 218 IAFEKSVFVRYTMNGWISYMDKAAIYQPSTSKIQDTFKF 256


>AC006660-1|AAM69103.2|  368|Caenorhabditis elegans Hypothetical
           protein H18N23.2b protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 586 IGFRKNVF--YKIN--VSHKFKYTLYK*STSMVQLNFKF 690
           I F K+VF  Y +N  +S+  K  +Y+ STS +Q  FKF
Sbjct: 238 IAFEKSVFVRYTMNGWISYMDKAAIYQPSTSKIQDTFKF 276


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 611 IKLMYHINLNIHCTSKAPAWSN*ILNLSIVF*I*TSLC*FLLYM 742
           + L+Y ++ N +CT  A   SN  LNLS +      +C F LY+
Sbjct: 64  MNLLYKMSKNTYCTFLAIVTSNAFLNLSTLI---LCVCLFYLYI 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,064
Number of Sequences: 27780
Number of extensions: 301122
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)