Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17n18
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.47 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.82 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              24   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 734 RLYSQLVDRQRTNARHAERLSRVHEVAHQLSRCNSLLNQT 615
           R    L +R+R +A H E+LSR      +  R   L NQT
Sbjct: 95  RFIKSLEERERKHAVHKEQLSREQRFLRR--RLEQLTNQT 132


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 370 LVSFIFYNTKIALTQYESSYVSLEPFNLIIVFCLS 474
           +V +IF +TK   T      ++L   N +++FC+S
Sbjct: 72  MVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 698 NARHAERLS-RVHEVAHQLSRCNSLLNQTIQDIEELNLILPEDK 570
           NA   E L  ++H+V       + +  QT+ DI E+N  + ++K
Sbjct: 15  NAMTIEELKIQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEK 58


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 370 LVSFIFYNTKIALTQYESSYVSLEPFNLIIVFCLS 474
           +V +IF +TK   T      ++L   + +++FC+S
Sbjct: 38  MVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMS 72


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
 Frame = +2

Query: 125  GIITDREGSIPLGNPQPSTHRT----------TFNVSTREHSNLISTRVDCIDSGNAVYM 274
            G+     GS+ LG  QPS  +T            N+ T     +I T      +G AVY 
Sbjct: 1215 GVGVSNSGSVVLGKQQPSQQQTQQQPIILPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYA 1274

Query: 275  SV 280
             V
Sbjct: 1275 RV 1276


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 HPTRKPSTFDASNYI 195
           H + KPS FD  NYI
Sbjct: 103 HLSWKPSDFDGINYI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,613
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)