Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17n11
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.4  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  SEAQRRIYILQNKTIDRGFISLNFK*NWNDNSVSIIYN 153
           S   + I  L NKTI     + N+K N+N+N   + YN
Sbjct: 76  SREPKIISSLSNKTIHN---NNNYKYNYNNNCKKLYYN 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 683  TVNISKESSRDHH--YLT*ETLFNYAVPV 603
            TV+ SKE  ++HH   +  +T   Y+V V
Sbjct: 1029 TVDFSKEDGKEHHLQIMNLKTYTQYSVVV 1057


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 348 IAHYLFIT*TILNPRLRWLMPITMSMH 428
           +A + FI  TIL   +  ++PI MS+H
Sbjct: 393 LAFWSFIVSTILLWFINKIIPIRMSIH 419


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 452 SLVNTLSRYLNITTKPSINM 511
           SL   L R+L+ITT P+ N+
Sbjct: 813 SLRILLKRFLDITTPPTPNL 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,913
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)