Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17n09
(841 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL163248-1|CAB90428.1| 214|Homo sapiens PRED28 protein. 87 1e-16
AF139682-1|AAD38520.1| 214|Homo sapiens putative N5-methyl-Gln ... 86 2e-16
BC011554-1|AAH11554.1| 186|Homo sapiens N-6 adenine-specific DN... 73 1e-12
BT006753-1|AAP35399.1| 136|Homo sapiens SNARE associated protei... 42 0.003
BC004494-1|AAH04494.1| 136|Homo sapiens SNAP-associated protein... 42 0.003
BC000761-1|AAH00761.1| 136|Homo sapiens SNAP-associated protein... 42 0.003
AL592150-2|CAI18797.1| 136|Homo sapiens SNAP-associated protein... 42 0.003
AK024555-1|BAB14927.1| 136|Homo sapiens protein ( Homo sapiens ... 42 0.003
AF086837-1|AAD11417.1| 136|Homo sapiens snapin protein. 42 0.003
EF523384-1|ABP57734.1| 1075|Homo sapiens POTE-2 alpha-actin prot... 30 9.1
>AL163248-1|CAB90428.1| 214|Homo sapiens PRED28 protein.
Length = 214
Score = 86.6 bits (205), Expect = 1e-16
Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = -1
Query: 394 EHA*CQKKTAEYNKVIFDSVRMDLASSFAXXXXXXXXXXXP---YVVTDSEECGGDDITA 224
E A C +TA NKV V DL YVVT +E G I A
Sbjct: 81 EAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGSHGIEA 140
Query: 223 SWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINIMSNHGFRYKTVVRRK 44
+WAGG GREV DR ++P L+ G FYL+ I+EN P+E++ IM G + T + R+
Sbjct: 141 AWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTTALSRQ 200
Query: 43 VRNEQQIVLKF 11
E VLKF
Sbjct: 201 AGQETLSVLKF 211
Score = 67.3 bits (157), Expect = 6e-11
Identities = 40/88 (45%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = -3
Query: 617 TPHQNHIDKADFDHVYEPAEDSFLLIDAIEKDLENLRSRNPALCLEVGSGSGVVVTAF-- 444
TP H+ + F VYEPAED+FLL+DA+E L +CLEVGSGSG VV+AF
Sbjct: 8 TPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAEL--AGVEICLEVGSGSG-VVSAFLA 64
Query: 443 GMAFPSTFCISTDIN--FRACIMSKKNC 366
M P + TDIN AC + C
Sbjct: 65 SMIGPQALYMCTDINPEAAACTLETARC 92
>AF139682-1|AAD38520.1| 214|Homo sapiens putative N5-methyl-Gln
methyltransferase protein.
Length = 214
Score = 85.8 bits (203), Expect = 2e-16
Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = -1
Query: 394 EHA*CQKKTAEYNKVIFDSVRMDLASSFAXXXXXXXXXXXP---YVVTDSEECGGDDITA 224
E A C +TA NKV V DL YVVT +E G I A
Sbjct: 81 EAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGSHGIEA 140
Query: 223 SWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINIMSNHGFRYKTVVRRK 44
+WAGG GREV DR ++P L+ G FYL+ I+EN P+E++ IM G + T + R+
Sbjct: 141 AWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPEEILKIMKTKGLQGTTALSRQ 200
Query: 43 VRNEQQIVLKF 11
E VLKF
Sbjct: 201 AGQETLSVLKF 211
Score = 67.3 bits (157), Expect = 6e-11
Identities = 40/88 (45%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = -3
Query: 617 TPHQNHIDKADFDHVYEPAEDSFLLIDAIEKDLENLRSRNPALCLEVGSGSGVVVTAF-- 444
TP H+ + F VYEPAED+FLL+DA+E L +CLEVGSGSG VV+AF
Sbjct: 8 TPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAEL--AGVEICLEVGSGSG-VVSAFLA 64
Query: 443 GMAFPSTFCISTDIN--FRACIMSKKNC 366
M P + TDIN AC + C
Sbjct: 65 SMIGPQALYMCTDINPEAAACTLETARC 92
>BC011554-1|AAH11554.1| 186|Homo sapiens N-6 adenine-specific DNA
methyltransferase 1 (putative) protein.
Length = 186
Score = 72.9 bits (171), Expect = 1e-12
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = -1
Query: 268 VVTDSEECGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINI 89
V+TD G I A+WAGG GREV DR ++P L+ G FYL+ I+EN P+E++ I
Sbjct: 100 VITDL--VGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPEEILKI 157
Query: 88 MSNHGFRYKTVVRRKVRNEQQIVLKF 11
M G + T + R+ E VLKF
Sbjct: 158 MKTKGLQGTTALSRQAGQETLSVLKF 183
Score = 67.3 bits (157), Expect = 6e-11
Identities = 40/88 (45%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = -3
Query: 617 TPHQNHIDKADFDHVYEPAEDSFLLIDAIEKDLENLRSRNPALCLEVGSGSGVVVTAF-- 444
TP H+ + F VYEPAED+FLL+DA+E L +CLEVGSGSG VV+AF
Sbjct: 8 TPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAEL--AGVEICLEVGSGSG-VVSAFLA 64
Query: 443 GMAFPSTFCISTDIN--FRACIMSKKNC 366
M P + TDIN AC + C
Sbjct: 65 SMIGPQALYMCTDINPEAAACTLETARC 92
>BT006753-1|AAP35399.1| 136|Homo sapiens SNARE associated protein
snapin protein.
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>BC004494-1|AAH04494.1| 136|Homo sapiens SNAP-associated protein
protein.
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>BC000761-1|AAH00761.1| 136|Homo sapiens SNAP-associated protein
protein.
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>AL592150-2|CAI18797.1| 136|Homo sapiens SNAP-associated protein
protein.
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>AK024555-1|BAB14927.1| 136|Homo sapiens protein ( Homo sapiens
cDNA: FLJ20902 fis, clone ADSE00189. ).
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>AF086837-1|AAD11417.1| 136|Homo sapiens snapin protein.
Length = 136
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 841 PYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVV 707
PYVKKL+ A+ +V +V N+LQ +Q+R+ + + KE + R ++
Sbjct: 80 PYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAML 124
>EF523384-1|ABP57734.1| 1075|Homo sapiens POTE-2 alpha-actin
protein.
Length = 1075
Score = 30.3 bits (65), Expect = 9.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 142 TFYLLLIEENIPDEVINIMSNHGFRYKTVVRRKV 41
T L L +PD ++ I++ HG+R+ T+ R++
Sbjct: 875 TLRLDLAGRELPDYLMKILTEHGYRFTTMAEREI 908
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,893,170
Number of Sequences: 237096
Number of extensions: 2205908
Number of successful extensions: 4675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4672
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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