Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17n09
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 410 Y*YRMLKGMPYQMQLLQHHYPSLLQG 487
           Y Y M + +PY M   Q+H P  ++G
Sbjct: 233 YYYYMREMLPYWMSSSQYHMPKEIRG 258


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 410 Y*YRMLKGMPYQMQLLQHHYPSLLQG 487
           Y Y M + +PY M   Q+H P  ++G
Sbjct: 233 YYYYMREMLPYWMSSSQYHMPKEIRG 258


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 713 SCTYTLFFYNHSPYFIYSILRSLQNI 790
           S  Y +  +N SP+ IYS L  L  I
Sbjct: 463 SAAYNVELHNSSPFSIYSFLERLNLI 488


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 713 SCTYTLFFYNHSPYFIYSILRSLQNI 790
           S  Y +  +N SP+ IYS L  L  I
Sbjct: 501 SAAYNVELHNSSPFSIYSFLERLNLI 526


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 710 NSCTYTLFFYNHSPYFIYSILRSLQNIQD 796
           N   YTL  Y H     Y+++R  +++ D
Sbjct: 247 NKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 444 WYGIPFNILYQYRHQLQSMHNVKKKLRNITRLYLIQ*GWIW 322
           W G+ F  + +Y+    S++ + +K+ N  RL      W W
Sbjct: 76  WRGMTFVTVPRYKGVPSSLNVISEKIGNGGRLLQPYPDWSW 116


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 710 NSCTYTLFFYNHSPYFIYSILRSLQNIQD 796
           N   YTL  Y H     Y+++R  +++ D
Sbjct: 247 NKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 279 LNIMISNILSANELARSILTESNITLLYSAVFF*HYAC 392
           LN  +S I + N    S+    N T+ YSA      AC
Sbjct: 79  LNAKVSEIAALNHKFSSVTLYRNKTVKYSARMHAIIAC 116


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 710 NSCTYTLFFYNHSPY 754
           NSC Y+  +YN++ Y
Sbjct: 309 NSCNYSNNYYNNNNY 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,332
Number of Sequences: 438
Number of extensions: 4386
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)