Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17n08
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58 pr... 317 3e-86
CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein. 317 3e-86
BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome, ma... 317 3e-86
BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome, ma... 317 3e-86
BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome, ma... 317 3e-86
BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome, ma... 317 3e-86
BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome, ma... 317 3e-86
AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens ... 317 3e-86
BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome, ma... 315 1e-85
AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens ... 314 2e-85
AF091075-1|AAC72944.1| 115|Homo sapiens proteasome subunit p58 ... 128 3e-29
U83303-1|AAC51337.1| 162|Homo sapiens line-1 reverse transcript... 35 0.30
U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein. 32 2.1
U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein. 32 2.1
U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein. 32 2.1
U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein. 32 2.1
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 32 2.1
U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein. 32 2.1
M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposo... 32 2.1
M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein. 32 2.1
M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein. 32 2.1
M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein. 32 2.1
AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein. 32 2.1
AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein. 32 2.1
AF003535-1|AAD04635.1| 573|Homo sapiens ORF2-like protein protein. 32 2.1
U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein. 32 2.8
AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein. 32 2.8
U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein. 31 3.6
AY878356-1|AAW63045.1| 280|Homo sapiens reverse transcriptase-l... 31 3.6
X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for L... 31 4.8
U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein. 31 4.8
AK096400-1|BAC04777.1| 644|Homo sapiens protein ( Homo sapiens ... 31 4.8
AK091740-1|BAC03736.1| 473|Homo sapiens protein ( Homo sapiens ... 31 4.8
>D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58
protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens cDNA
FLJ31237 fis, clone KIDNE2004846, highly similar to 26S
PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 517
Score = 317 bits (778), Expect = 3e-86
Identities = 157/242 (64%), Positives = 186/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 276 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 335
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 336 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 395
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 396 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 455
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 456 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 515
Query: 74 FP 69
FP
Sbjct: 516 FP 517
>BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 315 bits (773), Expect = 1e-85
Identities = 157/242 (64%), Positives = 185/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS A + + ALRKAPQ AVGF+QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 293 GRIKAIQLEYSVARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPS 352
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 353 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 413 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 472
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 473 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 532
Query: 74 FP 69
FP
Sbjct: 533 FP 534
>AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens cDNA
FLJ36887 fis, clone BNGH42005504, highly similar to 26S
PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 521
Score = 314 bits (772), Expect = 2e-85
Identities = 156/242 (64%), Positives = 185/242 (76%)
Frame = -1
Query: 794 GRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAP 615
GRIKA +LEYS+A + + ALRKAPQ AVG +QTV KL IVVELLLG+IP+R+ FRQ
Sbjct: 280 GRIKAIQLEYSEARRTMTNALRKAPQHTAVGLKQTVHKLLIVVELLLGEIPDRLQFRQPS 339
Query: 614 LRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGL 435
L+++L PYF LTQAVR GNL +F +VL+ +G +F+ D T+TLI+RLR NVIKT +R I L
Sbjct: 340 LKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 399
Query: 434 SYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREP 255
SYSRIS DIA+KL LDS EDAEFIVAKAIRDGVIEA+++ KGY+ +KE DIY TREP
Sbjct: 400 SYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREP 459
Query: 254 QLAFHQRISFCLDLHNQSVKAMRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDG 75
QLAFHQRISFCLD+HN SVKAMR+PPKSY K AKEMAE+DDD
Sbjct: 460 QLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDS 519
Query: 74 FP 69
FP
Sbjct: 520 FP 521
>AF091075-1|AAC72944.1| 115|Homo sapiens proteasome subunit p58
protein.
Length = 115
Score = 128 bits (308), Expect = 3e-29
Identities = 61/98 (62%), Positives = 71/98 (72%)
Frame = -1
Query: 362 IVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRY 183
++AKAIRDGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+
Sbjct: 18 LLAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRF 77
Query: 182 PPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
PPKSY K AKEMAE+DDD FP
Sbjct: 78 PPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 115
>U83303-1|AAC51337.1| 162|Homo sapiens line-1 reverse transcriptase
protein.
Length = 162
Score = 35.1 bits (77), Expect = 0.30
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L N +KE++ W N+P W K+ +V+ + K+ Y +N + I+ +T
Sbjct: 108 KENYKPLLNEIKEDTNKWKNIPCSWVGKINIVNMAILPKVTYRFNTIPIKLPMT 161
>U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposon
L1.2. ).
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein.
Length = 641
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 148 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 201
>M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein.
Length = 1192
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 699 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 752
>AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF003535-1|AAD04635.1| 573|Homo sapiens ORF2-like protein protein.
Length = 573
Score = 32.3 bits (70), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 296 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 349
>U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE + W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEETNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE + W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEETNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPINLPMT 835
>AY878356-1|AAW63045.1| 280|Homo sapiens reverse transcriptase-like
protein protein.
Length = 280
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L N ++E++ W N+P W ++ +V + K++Y ++ + I+ LT
Sbjct: 144 KENYKPLLNEIEEDTNKWKNIPCSWIGRINIVKMAILPKVIYRFSAIPIKLPLT 197
>X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for
LINE-1 transposable element ORFI and II. ).
Length = 712
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 219 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNTIPIKLPMT 272
>U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMT 835
>AK096400-1|BAC04777.1| 644|Homo sapiens protein ( Homo sapiens
cDNA FLJ39081 fis, clone NT2RP7018340. ).
Length = 644
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +K+++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 180 KENYKPLLKEIKDDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 233
>AK091740-1|BAC03736.1| 473|Homo sapiens protein ( Homo sapiens
cDNA FLJ34421 fis, clone HHDPC2002963. ).
Length = 473
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 181 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMT 234
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,587,673
Number of Sequences: 237096
Number of extensions: 2199287
Number of successful extensions: 7669
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 7514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7658
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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