Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17n07
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   4.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   4.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   6.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   6.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   6.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   6.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 161 DCYYCIS 141
           DCYYCIS
Sbjct: 322 DCYYCIS 328


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 161  DCYYCISPS 135
            DCY C SP+
Sbjct: 1067 DCYVCYSPN 1075


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 209 RHIALHNCH 235
           RHI LH+C+
Sbjct: 102 RHITLHHCY 110


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 292 CVNTWQAVIVSL 257
           C+ T QAV+VSL
Sbjct: 89  CMKTTQAVVVSL 100


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2   KFSLSGHYNKQYNQY 46
           K+S   +YN  YN Y
Sbjct: 323 KYSNYNNYNNNYNNY 337


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 209 RHIALHNCH 235
           RHI LH+C+
Sbjct: 102 RHITLHHCY 110


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/37 (18%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 YFIQMKHLTGAYAIITVFSLRHKINLKTKTHFKDTSL 221
           +++    + G Y  +  ++ +H  +++  T   DTS+
Sbjct: 201 FYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSM 237


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 8   SLSGHYNKQYNQYK 49
           SLS +YN   N YK
Sbjct: 84  SLSNNYNYNNNNYK 97


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 8   SLSGHYNKQYNQYK 49
           SLS +YN   N YK
Sbjct: 84  SLSNNYNYNNNNYK 97


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 8   SLSGHYNKQYNQYK 49
           SLS +YN   N YK
Sbjct: 84  SLSNNYNYNNNNYK 97


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 8   SLSGHYNKQYNQYK 49
           SLS +YN   N YK
Sbjct: 317 SLSNNYNYNNNNYK 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,851
Number of Sequences: 438
Number of extensions: 1681
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)