Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17n01
(711 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 24 1.6
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 24 1.6
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 24 1.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.8
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 23 3.8
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 3.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 6.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 6.6
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 488 DMRPGD-IVYFIIWILYMAKQFNDLHHFI 405
D P D +VYFI W+ Y+ N L + I
Sbjct: 355 DCCPSDRMVYFITWLGYVNSALNPLIYTI 383
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 488 DMRPGD-IVYFIIWILYMAKQFNDLHHFI 405
D P D +VYFI W+ Y+ N L + I
Sbjct: 355 DCCPSDRMVYFITWLGYVNSALNPLIYTI 383
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 488 DMRPGD-IVYFIIWILYMAKQFNDLHHFI 405
D P D +VYFI W+ Y+ N L + I
Sbjct: 355 DCCPSDRMVYFITWLGYVNSALNPLIYTI 383
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 3.8
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 480 SHVLRGHYVQTFQLWQVRIIHGNPIKS-SQTTLWKFPIVIQISISRNQ 620
S+ G + QL +R+I GN I + S+ LW P + ++++RN+
Sbjct: 467 SNFYNGSFRNLDQLTGLRLI-GNDIGNLSRGMLWDLPNLQILNLARNK 513
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 175 TKEIIHLPIFRFTVPS*ILKYVWH 246
TK +IHL T P ++ Y++H
Sbjct: 105 TKYLIHLKEIEDTEPILLIAYIYH 128
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 22.6 bits (46), Expect = 3.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 205 RFTVPS*ILKYVWHFLIVTILFFFCLKAGFLICIIYSENNVQQKHKCIFLFT 360
R V S + WHF++ L L GF+ + N + ++ F FT
Sbjct: 285 RMGVASFCKAFPWHFVVDRQLELVQLGVGFMRIFGHHLNRLGREISTYFTFT 336
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -1
Query: 711 YSHPQTYVPLHHLNVLSANLPNLEATPLSHFDY 613
+ H + HH + +A + +TPL+H Y
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLAHSSY 453
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 448 YCIWLNSLMTFIIL*RTDLFKYAL 377
+CIW T ++ T LF YAL
Sbjct: 222 FCIWKGVKWTGKVVYFTSLFPYAL 245
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 448 YCIWLNSLMTFIIL*RTDLFKYAL 377
+CIW T ++ T LF YAL
Sbjct: 275 FCIWKGVKWTGKVVYFTSLFPYAL 298
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 366 TRGCNAYLNKSVLYKMMKVIKLFSHIQYPNYKI 464
+RGC A L V + ++++ S +Q P++ I
Sbjct: 143 SRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFYI 175
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 366 TRGCNAYLNKSVLYKMMKVIKLFSHIQYPNYKI 464
+RGC A L V + ++++ S +Q P++ I
Sbjct: 143 SRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFYI 175
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,921
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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