Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17m12
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 470 SSGRYHIIFAFFVSLMFAISLGSLFGY 390
           SSG+  +   FF+ ++  I +G+L  Y
Sbjct: 4   SSGKQQVYQLFFIQIVLIIVMGALMTY 30


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 743 PIVTRTMSGSIRYCNRCVLVKPD 675
           P  TR ++ +I+Y N   +V+PD
Sbjct: 247 PFFTRVVTDTIKYRNDNNIVRPD 269


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 681 LDEHAPVAVAYRSRHCPCNNWQILSKVFKNC 773
           LD++A V V    RH P +      K+F  C
Sbjct: 69  LDKNAEVDVQKALRHLPRSMQDSTKKLFNKC 99


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 469 DVAVPKSPFQSRMKYG 516
           D+ +   PFQ RMK+G
Sbjct: 99  DLPISGKPFQIRMKHG 114



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 799 VQNLKIHKEQFLKT--LLRICQLL 734
           +QN K+  EQFL T   L  C+++
Sbjct: 553 LQNPKVSNEQFLNTAATLSFCEMI 576


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 790 LKIHKEQFLKTLLRI 746
           LKI  E+FL T+LR+
Sbjct: 26  LKIWTEEFLSTILRL 40


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 189 TPAADVHEPPGHPWLRVHGHHALQRRDGP 103
           TP    ++   +PW+++ GH     R GP
Sbjct: 229 TPFFQTYKKQRYPWVQLAGHQG-NFRAGP 256


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 189 TPAADVHEPPGHPWLRVHGHHALQRRDGP 103
           TP    ++   +PW+++ GH     R GP
Sbjct: 144 TPFFQTYKKQRYPWVQLAGHQG-NFRAGP 171


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 189 TPAADVHEPPGHPWLRVHGHHALQRRDGP 103
           TP    ++   +PW+++ GH     R GP
Sbjct: 463 TPFFQTYKKQRYPWVQLAGHQG-NFRAGP 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,390
Number of Sequences: 438
Number of extensions: 5217
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)