Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17m04
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    28   1.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    27   4.0  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.3  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 260 FSFNYLVPRIRIFQFSSYVCLHQLYFLLIAQLRFGQYVTQL 382
           FSF + + +I I  FSS+  LH L+F  +    F  ++  L
Sbjct: 133 FSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -2

Query: 775 LEAKTTLEVDPKMLIHPPGSVPNECRLHDQLSRKVYILKVAPTITPELIRGVCEGMEGVV 596
           +E   T+E+D  +      ++ +  +L     + + ++++ P +T ELI+   + M G V
Sbjct: 253 IEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKV 312

Query: 595 L--ETYGNGNIPIKRKEIYKEIERAVK 521
           L           IK+++ + E  RA+K
Sbjct: 313 LYHSHVHKSKEEIKQQDNFHEQSRALK 339


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 2   LKLGFSPGGYGQVRFFSCVMAKLGVSPVLWPKLG 103
           LK G +PGG G+V F  C + K  + P+   + G
Sbjct: 154 LKRGSAPGGGGEVNFL-CPVIKESLPPIRLSEFG 186


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 551 LFALDWYVPVSICL*NYPFHAFTNSTD-QLRCNCRRH 658
           +F+    +P+SI L N+PFH      + +L C+C  +
Sbjct: 146 IFSFGGTLPLSITLPNHPFHVPVYLFEKRLHCSCSEY 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,499,237
Number of Sequences: 5004
Number of extensions: 74962
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)