Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17m04
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598     28   7.3  
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026     28   9.6  

>01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598
          Length = 169

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 614 RHGRGSSRDIWKREHTNQAQRD-LQGDRKSC*EQRVGCKRNSMH*RYRP 471
           R+ R  S      E  NQ     L   R  C +QRV C R S H  +RP
Sbjct: 110 RYWRSPSSSQTAEEGQNQGLPSVLSSKRGPCRDQRVACGRRSAHLIHRP 158


>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
          Length = 453

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 742 KMLIHPPGSVPNECRLHDQL 683
           K  +HP G  P+ CRL D L
Sbjct: 311 KFCLHPAGDTPSACRLFDAL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,086,048
Number of Sequences: 37544
Number of extensions: 514847
Number of successful extensions: 1144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)