Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17m04
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.60 
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    25   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   7.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.8  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = -2

Query: 667 ILKVAPTITP-ELIRGVCEGMEGVVLETYGNGNIPIKRKEIYKEI-----ERAVKNNVLV 506
           +L   PT T  EL RG+    + ++    G G+ PI  +E  K I     E      VL 
Sbjct: 135 VLPGKPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLA 194

Query: 505 VNVTQCINGT 476
           VN+ +  N T
Sbjct: 195 VNIEKSENET 204


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 614 FTNSTDQLRCNCRRHL 661
           F   T  ++CNC+RH+
Sbjct: 21  FVTPTMSIKCNCKRHV 36


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 243 LEWFVGRAISDRLLLHDSL 187
           L WF+ + I  R+ +HD L
Sbjct: 404 LLWFINKIIPIRMSIHDEL 422


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 355 PFWSVRNTTWPRPLRLSYRRPEPLRIPRVKVQ 450
           P+W+  N    + +   YR P P+  P    Q
Sbjct: 838 PYWNWSNQDVIKSIEKGYRLPAPMDCPEAIYQ 869


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 567 GMFPFPYVSRTTPSMPS 617
           G + +PY    TP+ PS
Sbjct: 214 GYYAYPYCYNLTPNQPS 230


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 605 RGSSRDIWKREHTNQAQRDLQGDRKSC*EQRVGCKRNS 492
           R  SRD  +    ++    L  +++   E+R   KRNS
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 605 RGSSRDIWKREHTNQAQRDLQGDRKSC*EQRVGCKRNS 492
           R  SRD  +    ++    L  +++   E+R   KRNS
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNS 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,148
Number of Sequences: 438
Number of extensions: 5386
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)