Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17l21
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 255 NVNNLENSQELNSVKKKLLTVFLNSLSWAYY 163
           N N    S E+   K  +   FL  LSW  Y
Sbjct: 260 NANTSSQSAEIRIAKAAITICFLYVLSWTPY 290


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 264 KYKNVNNLENSQELNSVKKKL 202
           KY N NN  N+   N+  KKL
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKL 110


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 264 KYKNVNNLENSQELNSVKKKL 202
           KY N NN  N+   N+  KKL
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKL 110


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 264 KYKNVNNLENSQELNSVKKKL 202
           KY N NN  N+   N+  KKL
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKL 110


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 264 KYKNVNNLENSQELNSVKKKL 202
           KY N NN  N+   N+  KKL
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKL 110


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 401 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 434


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 634 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 533
           LQE S K++L   +   DD+ H  +       YI
Sbjct: 401 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,302
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)