Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17l12
(842 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001467-1|AAH01467.1| 179|Homo sapiens acireductone dioxygenas... 183 6e-46
AK127473-1|BAC86996.1| 173|Homo sapiens protein ( Homo sapiens ... 183 6e-46
AK001775-1|BAA91901.1| 179|Homo sapiens protein ( Homo sapiens ... 183 6e-46
AB158319-1|BAD10866.1| 179|Homo sapiens membrane-type 1 matrix ... 183 6e-46
AB073609-1|BAD38646.1| 193|Homo sapiens putative protein produc... 183 6e-46
AF087863-1|AAP97173.1| 179|Homo sapiens submergence induced pro... 183 8e-46
AK222467-1|BAD96187.1| 191|Homo sapiens Membrane-type 1 matrix ... 180 4e-45
AF403478-1|AAL25800.1| 116|Homo sapiens SIPL protein. 169 1e-41
AC114810-2|AAY24022.1| 99|Homo sapiens unknown protein. 151 4e-36
AC142528-1|AAX82038.1| 80|Homo sapiens unknown protein. 37 0.11
>BC001467-1|AAH01467.1| 179|Homo sapiens acireductone dioxygenase 1
protein.
Length = 179
Score = 183 bits (446), Expect = 6e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 52 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 111
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 112 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 171
Query: 478 VEKL 467
V+ L
Sbjct: 172 VKFL 175
>AK127473-1|BAC86996.1| 173|Homo sapiens protein ( Homo sapiens
cDNA FLJ45565 fis, clone BRTHA3007662. ).
Length = 173
Score = 183 bits (446), Expect = 6e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 46 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 105
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 106 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 165
Query: 478 VEKL 467
V+ L
Sbjct: 166 VKFL 169
>AK001775-1|BAA91901.1| 179|Homo sapiens protein ( Homo sapiens
cDNA FLJ10913 fis, clone OVARC1000209, weakly similar to
Oryza sativa submergence induced protein 2A mRNA. ).
Length = 179
Score = 183 bits (446), Expect = 6e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 52 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 111
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 112 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 171
Query: 478 VEKL 467
V+ L
Sbjct: 172 VKFL 175
>AB158319-1|BAD10866.1| 179|Homo sapiens membrane-type 1 matrix
metalloproteinase cytoplasmic tail binding protein-1
protein.
Length = 179
Score = 183 bits (446), Expect = 6e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 52 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 111
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 112 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 171
Query: 478 VEKL 467
V+ L
Sbjct: 172 VKFL 175
>AB073609-1|BAD38646.1| 193|Homo sapiens putative protein product
of HMFT1638 protein.
Length = 193
Score = 183 bits (446), Expect = 6e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 66 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 125
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 126 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 185
Query: 478 VEKL 467
V+ L
Sbjct: 186 VKFL 189
>AF087863-1|AAP97173.1| 179|Homo sapiens submergence induced
protein 2 protein.
Length = 179
Score = 183 bits (445), Expect = 8e-46
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD E
Sbjct: 52 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKE 111
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 112 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGKY 171
Query: 478 VEKL 467
V+ L
Sbjct: 172 VKFL 175
>AK222467-1|BAD96187.1| 191|Homo sapiens Membrane-type 1 matrix
metalloproteinase cytoplasmic tail binding protein-1 var
protein.
Length = 191
Score = 180 bits (439), Expect = 4e-45
Identities = 79/124 (63%), Positives = 94/124 (75%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 659
LEK++ ER Y++ D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDV D E
Sbjct: 64 LEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVGDKE 123
Query: 658 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDY 479
DQWIRI + KGDM+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R Y
Sbjct: 124 DQWIRIFMEKGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQY 183
Query: 478 VEKL 467
V+ L
Sbjct: 184 VKFL 187
>AF403478-1|AAL25800.1| 116|Homo sapiens SIPL protein.
Length = 116
Score = 169 bits (410), Expect = 1e-41
Identities = 74/111 (66%), Positives = 85/111 (76%)
Frame = -2
Query: 799 DEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDM 620
D + K+ LPNYEEKIK FY EHLH D+EIR+ILDGSGYFDVRD EDQWIRI + KGDM
Sbjct: 2 DIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDM 61
Query: 619 LVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPADEMPCRKDYVEKL 467
+ +P+GIYHRFT+D NY KA R F+GEPVW YNRPAD R YV+ L
Sbjct: 62 VTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFL 112
>AC114810-2|AAY24022.1| 99|Homo sapiens unknown protein.
Length = 99
Score = 151 bits (365), Expect = 4e-36
Identities = 65/95 (68%), Positives = 74/95 (77%)
Frame = -2
Query: 751 IKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYHRFTLDTN 572
IK FY EHLH D+EIR+ILDGSGYFDVRD EDQWIRI + KGDM+ +P+GIYHRFT+D
Sbjct: 1 IKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAGIYHRFTVDEK 60
Query: 571 NYIKAKRFFIGEPVWLPYNRPADEMPCRKDYVEKL 467
NY KA R F+GEPVW YNRPAD R YV+ L
Sbjct: 61 NYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFL 95
>AC142528-1|AAX82038.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -2
Query: 838 LEKLKNERGYTYEDEMVCSKECLPNYEEK 752
LEK++ ER Y++ D + K+ LPNYEEK
Sbjct: 52 LEKIRRERNYSWMDIITICKDKLPNYEEK 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,160,551
Number of Sequences: 237096
Number of extensions: 2765590
Number of successful extensions: 9447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9447
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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