Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17l06
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    29   0.48 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.4  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   3.4  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   5.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.8  

>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 475 GFLLHWSSYDNSQDVLKKYKKKNYYIPHFRS 383
           G LL WSS+D+   V     +K Y +PH ++
Sbjct: 112 GELLLWSSFDSKITVWSLNTQKGYLLPHVKT 142


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 197 CVVSVTHVFASRAKRFQL 144
           CV+S+ +VFAS +K F+L
Sbjct: 453 CVLSLQNVFASNSKEFKL 470


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = -2

Query: 406 YYIPHFRSFPCPFCGFFLIYLSIQTDISIL 317
           Y++ H   F C   G ++ ++ ++  + +L
Sbjct: 145 YFVKHITKFSCEIFGLYVAFIYLEKGVQVL 174


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 187 ETTQAARSSPLPLVTFTLP 243
           E TQ   +SP PLVT +LP
Sbjct: 416 EKTQPTNASPAPLVTPSLP 434


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 371  ILWFFFNLFEYSNRHFYFILADTD--SI*LQD 282
            +++F  ++F++   HF +   DTD  S+ LQD
Sbjct: 1546 LIYFILDIFQFRGLHFAYDEIDTDQLSMDLQD 1577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,228
Number of Sequences: 5004
Number of extensions: 34495
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)