Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17l06
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.32 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.42 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.56 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.1  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -2

Query: 463 HWSSYDNSQDVLKKYKKKNYY-IPHFRSFPCP-----FCGFF 356
           ++S+Y+N  +    Y KK YY I +    P P     +CG F
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYCGNF 131


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 460 WSSYDNSQDVLKKYKKKNYYIPHFRSFP 377
           WSS DN+    + Y  +NY   H  SFP
Sbjct: 362 WSSLDNTNTNDQDYSSQNYLTVH--SFP 387


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 460 WSSYDNSQDVLKKYKKKNYYIPHFRSFPCP---FCGFF 356
           +S+Y+N  +  KK   KNY I +    P P   +CG F
Sbjct: 91  YSNYNNYNNYNKKLYYKNYII-NIEQIPVPVPIYCGNF 127


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -2

Query: 463 HWSSYDNSQDVLKKYKKKNYYIPHFRSFPCP-----FCGFF 356
           ++++Y+ + +    YKK  Y I +    P P     +CG F
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNF 140


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 385 SFPCPFCGFFLIYLSIQTDISILYLPIPILFNYR 284
           S   P    +L++  I   +SIL   I I +N+R
Sbjct: 290 SLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFR 323


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 397 PHFRSFPCPFCG 362
           P  R++ CP CG
Sbjct: 68  PVLRAYTCPICG 79


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -2

Query: 478 IGFLLHWSSYDNSQDVLKKYKKKNYYIPHFRSFPCP-----FCGFF 356
           I  L +  +Y N+      YKK  Y I +    P P     +CG F
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPVPIYCGNF 349


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 397 PHFRSFPCP 371
           PH+R+FP P
Sbjct: 44  PHWRAFPAP 52


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 397 PHFRSFPCP 371
           PH+R+FP P
Sbjct: 44  PHWRAFPAP 52


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 475 GFLLHWSSYDNSQDVLKKYK 416
           G LL  ++ DNS  +L KY+
Sbjct: 14  GVLLLLTNADNSVHILSKYQ 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,585
Number of Sequences: 438
Number of extensions: 2741
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)