Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17l04
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 66 5e-12
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.047
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.25
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 31 0.25
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 29 0.77
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 29 1.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 1.8
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 2.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.3
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 3.1
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 5.4
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.1
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 9.4
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 9.4
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.4
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 25 9.4
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 9.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 9.4
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 66.1 bits (154), Expect = 5e-12
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 3/237 (1%)
Frame = -1
Query: 796 CDECGKLFKNQDEIEYHAAKTNHSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 617
C EC KL + + E+H+ KT+H F
Sbjct: 5 CLECDKLLSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKER 64
Query: 616 XXXXXXXXXXXXXRIKSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEA 437
KS E A +++Q+Q + +++ R +K ED + R+++ A+IE
Sbjct: 65 ILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAEIER 124
Query: 436 DKQARKLAALGKXXXXXXXXXXXXXXXXXXPNP---KVSYEQARIQLRLPDGRALSQTFG 266
DK+ R K + + R +R DG+ + T
Sbjct: 125 DKKRRAAERENKNSSVKETAAPIKQPKNANSSSTCTRTPPTSGRFSIR-HDGQVCNITIA 183
Query: 265 AKEQLSAVRLYLQMHAHEYAQSDNYKLMTTFPKKVFTSEDYDKPLDFLGLVPSAVII 95
A+E L R Q A + S K TTFP+ + ++ +DKP++ L L PSAV+I
Sbjct: 184 AEETL---RQLAQQVAEKMNVSPPTKFTTTFPRASYGTDVFDKPVNQLDLFPSAVLI 237
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/55 (30%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = -1
Query: 571 KSGKELQDAKQRLQEQEMQKLVEQR-RMEKI--EDQKARERVRAQIEADKQARKL 416
++ +E +QRL+E+E ++++E+R R EK+ E+++ R R + E++++ R+L
Sbjct: 681 EADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRL 735
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -1
Query: 544 KQRLQEQEMQKLVEQRRMEKIEDQKARER----VRAQIEADKQ 428
+QRL+ ++ +K E R ++ E QK +ER + Q EAD++
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADRE 685
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = -1
Query: 553 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARE-RVRAQIEADKQARKLAALGK 401
++ +QR++E+E + E++R+ ++E+ + E R++ + + K+ ++ A GK
Sbjct: 261 EEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGK 312
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 565 GKELQDAKQRLQE-QEMQKLVEQRRMEKIEDQKARERVRAQIEADKQ 428
GK+ +K++ +QK++E++R + E+Q+ RE E +K+
Sbjct: 234 GKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIREEEARIAEEEKR 280
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = -1
Query: 571 KSGKELQDAKQRLQEQEM-QKLVEQRRMEKIEDQKARERVRAQIE--ADKQARKLAALGK 401
++GKE + KQR QE+ + QK E+ + EK Q+ +E+ + E A K+ ++L L K
Sbjct: 73 EAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEK 132
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = -1
Query: 574 IKSGKELQDAKQ--RLQEQEMQKLVEQRRMEKIEDQKAR--ERVRAQIEADKQARK 419
+K KE Q +Q +L+EQE + + +EK+E ++ R E+ R + E D++ R+
Sbjct: 98 LKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLRE 153
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = -1
Query: 571 KSGKELQDA-KQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKL 416
K KEL+ K+R++ QE Q+ E+R +K+ +++ +R+R + +K+ ++L
Sbjct: 122 KKMKELEKLEKERIRLQEQQRRKEERD-QKLREKEEAQRLRQEQILNKERQQL 173
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 401 NSSTFSPSTHPCRHTNNS-SEP-QSII*ASKNTTAITRRKGSFTDIWS 264
N ST + S+ P HTN S S+P Q+ + NTT ++ G+ T+ +S
Sbjct: 84 NYSTLTISSQPLIHTNTSISKPSQTATPQNTNTTQVSLTNGTTTNSYS 131
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 271 FGAKEQLSAVRLYLQMHAHEYAQSDNYKLMTTFPKKVFT 155
F +K+ LS L HAH S+ K +FP KV T
Sbjct: 478 FASKDDLSGFIQLLDSHAHHLNASEGSKSSGSFPGKVQT 516
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -1
Query: 553 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKLAALG 404
++AK+R Q + +KL QRR+++ D++ ++ A+K A + A +G
Sbjct: 828 REAKEREQREMAEKLERQRRIQQERDEEISRKL-----AEKAAARRANIG 872
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 416 SSIRKNSSTFSPSTHPCRHTNNSSEPQSII*ASKNTT 306
SS++K S+FSP++ P TN++S S + N T
Sbjct: 337 SSVKKLDSSFSPTSLPTFTTNSASSGLSTSYTNNNDT 373
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/39 (25%), Positives = 26/39 (66%)
Frame = -1
Query: 541 QRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQA 425
Q +Q+Q+ Q+ +Q++ ++ + Q+ +++ + Q + KQA
Sbjct: 254 QHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQA 292
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 316 RIQLRLPDGRALSQTFGAKEQLSAVRLYLQMHAHEYAQSDNYKLMTTFPKK-VFTSED 146
RIQ+R+P+G + F + +S V Y++ A E A + L TF +K ++TS D
Sbjct: 355 RIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVA-EGADKQPFSL--TFQRKSLWTSLD 409
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -1
Query: 556 LQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKL 416
+++ K RL E++++++V++ ED+ +ER+ A+ + A L
Sbjct: 531 IKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSL 577
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 553 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARER 458
Q AKQ Q+++ L +R +ED +A+E+
Sbjct: 623 QKAKQLKQQEDEDNLKRKRSESDVEDNEAKEK 654
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 550 DAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKLAALG 404
D RL+ QE+ + EK+ ++ + R +IE Q++ AA G
Sbjct: 459 DQHIRLKSQELDAFAQATYREKLYMKRECQNARKKIEQQLQSKDTAANG 507
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 565 GKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIE 440
G+EL +++ RL+ +QKLV Q+R + + + IE
Sbjct: 146 GEELSNSQYRLECAAIQKLVAQKRANRRSSKSTLKNSANDIE 187
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 553 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVR-AQIEADKQARKLAAL 407
Q A+ L+EQ +K + R K E +ER + A+ E ++ +K+A +
Sbjct: 533 QQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAEI 582
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -1
Query: 568 SGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKLAAL 407
S +E+ DAK+ +QE+E+ + E + + + + + + E + + L L
Sbjct: 354 SFEEVDDAKESIQEKEIDETTESKATHDSSETSSSKELPKEEEKESSSFDLQPL 407
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -1
Query: 565 GKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADK 431
GK+++D ++ + E+ + E+R ++++D ERV+ + E K
Sbjct: 331 GKKVEDEQKTVVEEIPEMDEEERLDQELQDLSEAERVKLKRERRK 375
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 565 GKELQDAKQRLQEQEMQKLVEQRR 494
G ELQDAK+RL E + + +RR
Sbjct: 473 GSELQDAKRRLDELKAKAEDAERR 496
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 574 IKSGKELQDAKQRLQEQEMQKLVEQRRMEKIED-QKARERVRAQIEADKQARKLA 413
++S +++ D LQ +E KL+E+R+ + E ++ +A E +++ R+LA
Sbjct: 339 VESSEDV-DPASLLQNEEFHKLIEERQRQHEERLKRINANKKALEELNQKKRELA 392
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 559 ELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVR 452
E + K+R+Q QE + Q+R+E + QK RE+ R
Sbjct: 81 ERSEEKRRIQ-QEKEDAKVQKRLEIEKKQKDREQTR 115
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 544 KQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARK 419
KQRL+E K + + +K R AQ++ ++Q R+
Sbjct: 21 KQRLEEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKRE 62
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 103 LQMVQDPKNPEVYHNLH 153
LQ +QDPKN + H +H
Sbjct: 126 LQRLQDPKNTSLLHAIH 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,596
Number of Sequences: 5004
Number of extensions: 51185
Number of successful extensions: 198
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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