Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17l04
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.27 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.81 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   10.0 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 562 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQ 428
           K+L+ A Q+LQEQ    +++Q  + +  D+K       Q+   +Q
Sbjct: 140 KKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQ 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = -1

Query: 544  KQRLQEQEMQKLVEQRRMEKIEDQKARER 458
            +Q+ Q+Q+ Q+  +Q++ ++ +  +ARER
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQARER 1239



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 556 LQDAKQRLQEQEMQKLVEQRRMEKIEDQKAR-ERVRAQIEADKQARKLAA 410
           +QD  +  Q+Q+ Q   +QR+ ++ E+++ R + ++ ++  D+ A   AA
Sbjct: 156 VQDHHRPYQQQQQQ---QQRQQQRQEERRLRPDEIKVEVGEDEFANGGAA 202


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 508
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 508
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 508
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 281 FTDIWS*RTVVCSTTVFTNACT*ICTIR*LQIND 180
           F D W    V+CST    N C  I   R + I D
Sbjct: 97  FCDTWIAFDVMCSTASILNLCA-ISLDRYIHIKD 129


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
 Frame = +3

Query: 222 CICKYSRTADNCSLAPN------VCERALPSGNR 305
           C  KY      C L+PN      VC R  P  +R
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMRKCPRRHR 115


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 294 TEGLFHRHLELKNSCLQYD 238
           ++GL HR ++LKN  L  +
Sbjct: 715 SQGLVHRDVKLKNVLLDIE 733


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 294 TEGLFHRHLELKNSCLQYD 238
           ++GL HR ++LKN  L  +
Sbjct: 753 SQGLVHRDVKLKNVLLDIE 771


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,364
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)