Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17l03
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 261 1e-70
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 132 8e-32
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 129 4e-31
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 127 2e-30
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 120 3e-28
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 112 7e-26
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 107 2e-24
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.47
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 28 1.9
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 2.5
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 2.5
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 4.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 7.7
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 7.7
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.7
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 261 bits (639), Expect = 1e-70
Identities = 124/251 (49%), Positives = 174/251 (69%)
Frame = -1
Query: 765 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 586
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+EK++TSKL +
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 585 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYM 406
P N RI +D H+G+A G I D + IV+ AR EA+++R YGSP+P + +R+ Y+
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 405 HAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL 226
+T YS+VRP+G + T+ D EGP +YM++P+GV + Y G A GK +Q A+ E+EKL
Sbjct: 120 QLFTCYSSVRPFGVMSFVATY-DSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKL 178
Query: 225 KLGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHELVPRELATEAENQA 46
L +K+ V+EAARI+Y HDE +K+ E+E++WV +T G H VP EL EAE A
Sbjct: 179 NFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAEAYA 238
Query: 45 KQALADIEDSD 13
++ +AD E+ D
Sbjct: 239 RR-IADGEEED 248
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 132 bits (318), Expect = 8e-32
Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
Frame = -1
Query: 744 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 565
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV VEK +TS L E + +++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 564 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAY---- 397
F ID H+G A++GL +DAR I+E AR + N+R Y P ++ + + +
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGE 127
Query: 396 --TLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLK 223
RP+G ++++ D GPQ+Y +PSG F Y A+G + AK+E+ K
Sbjct: 128 DGEERIMSRPFGVALLI-AGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF 186
Query: 222 LGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHELVPRELA 67
D+T++E +++ V +E D + ++L+ V+ + G H E+A
Sbjct: 187 HKDMTLEEAEVLILKVLRQVMEEKLDSK-NVQLAKVTAE-GGFHIYNDEEMA 236
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 129 bits (312), Expect = 4e-31
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 5/240 (2%)
Frame = -1
Query: 750 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 571
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V VE+ KL +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 570 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 391
+I +D HV +A AGL +DAR +++ AR EA N++ PV ++YL V+ YT
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQ 121
Query: 390 YSAVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGD 214
VRP+G S ++ G P++Y +P+G+ ++ A+G+A +AA+ +EK
Sbjct: 122 SGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEG 181
Query: 213 LTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRH----ELVPRELATEAENQA 46
L+ E + A + V + EL + KD + H + + +E+ E E +A
Sbjct: 182 LSRDETIHLAVSSLLEV-VQTASGNIELAIMDPGKDVEFLHSDKIDTIVKEIQDEKEAEA 240
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 127 bits (306), Expect = 2e-30
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Frame = -1
Query: 744 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 568
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A EK +TSKL E + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 567 IFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLY 388
++HI +++ AVAGL +DA ++ AR Y + +P + L RV YT Y
Sbjct: 65 LYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQY 124
Query: 387 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 208
+RP+G S + W G Q++ +PSG S+ ++G + ++ + + D+
Sbjct: 125 GGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDIN 184
Query: 207 VKELVREAARIIYLVHDELKDKQFELELSWVSKDT 103
+ E A + + D ++E + ++KDT
Sbjct: 185 LDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDT 219
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 120 bits (288), Expect = 3e-28
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = -1
Query: 744 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 565
Y S + FSP+G++ Q+EYA AV T +G++ DGVV A EK TS+L + +++
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64
Query: 564 FHIDEHVGMAVAGLISDARQIVETARSEA-SNYRSQYGSPVPLKYLNERVSMYMHAYTLY 388
I +GM +G+ D R +V+ +R A + Y+ Y P K L + ++ M T
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 387 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 208
VRP+G S+++ D +GP +Y +DPSG F++ A+GK+ AAKT +EK +L
Sbjct: 125 GGVRPFGVSLLV-AGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELE 183
Query: 207 VKELVREA 184
+ + V A
Sbjct: 184 LDDAVHTA 191
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 112 bits (269), Expect = 7e-26
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = -1
Query: 747 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 571
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ +K + KL + K
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 570 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 391
+F I + +G + G I+DAR V ARSEA+ + + G P+P L +R++ T
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 390 YSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 229
+A+RP G ++ + D GP ++ LDP+G Y + G + +EK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEK 179
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 107 bits (257), Expect = 2e-24
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 7/222 (3%)
Frame = -1
Query: 744 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 565
YD A+ +SP GR+ QVEYA +A++ +GL K V K +L K++
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKL 63
Query: 564 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 385
ID+H+G+A+AGL DAR + + EA + ++ + P+P++ L +V+ T
Sbjct: 64 IRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEY 123
Query: 384 AVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL--KLGD 214
RPYG +V+G D GP + PSG+ Y G ++G Q+A+T IE+ D
Sbjct: 124 GRRPYGVGFLVIG--YDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 213 LTVKELVREAARIIYLVHDEL-KDKQF---ELELSWVSKDTK 100
+ +EL+ A R + D L KD++ + +S + KD K
Sbjct: 182 SSREELILSALRAL---RDTLSKDQELTEENVSISVIGKDEK 220
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 497 STICLASDMSPATAMPTCSSIWNILLFAPGSYSLDVINFSTANTTPSFPRRPITVPEFST 676
+T C S P T+ P SS + I P + + T +T+ + PIT P ++
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTS 611
Query: 677 AFAAYSTWKT 706
+ + +W +
Sbjct: 612 SSSTQVSWNS 621
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 610 LLNSKYHSVFSSEANYCSRIFYSLCSIFHLENAT 711
LL +KY V+SS N C +++ ++F +T
Sbjct: 488 LLRNKYPKVYSSTPNLCDQVWLDRTNLFPCNRST 521
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 555 DEHVG-MAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAV 379
D H+G + + + ++ V T+ + + +YG+PVP+K++ + MH+ A+
Sbjct: 393 DHHLGGINSITFLENGKRFVTTSDDSSMRFW-EYGTPVPIKFV---ADIAMHSMPRV-AL 447
Query: 378 RPYGCSV 358
RP G S+
Sbjct: 448 RPNGKSI 454
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -1
Query: 780 KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 622
KQC + S TG + G F V+Y KA +G + + VF
Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 503 ICLASDMSPATAMPTCSSIWNI--LLFAPGSYSLDVINFSTANTTPSFPRR 649
I L++ + + P C +++ L + PGSY L I+ N PR+
Sbjct: 455 IALSTKLYTGSIFPKCEKDFDLHFLAYKPGSYDLSSISIEDVNHVVHKPRK 505
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 638 KTEWYLLLRS*SHPNCMNLAQTRGYSILMN 549
+ E++LL + SHPN N A Y +L+N
Sbjct: 64 ENEYFLLRQLSSHPNGRNYAIAPAYILLLN 93
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -1
Query: 639 KDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDAR 508
K G+V +V++ I + YE + +FHI E++ ++++ LI R
Sbjct: 207 KSGLVNSVDRCI--QFYEKSISLPMFHIAENLAISLSCLIISFR 248
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -1
Query: 792 SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 655
S ++ + + + +G G +S +G V + KAVENS +
Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 271 SRKSQTGSKNRDRKAKTWRPHSE 203
S +TG+K R +K+ +W+P ++
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDND 515
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 345 WTDYEGPQMYMLDPSGVSF-SYFGCAVGKAKQAAKTEIEKLKLGDLTVKELVREAAR 178
WT + + PS F S F C V K + + + G + VKE +R+ +R
Sbjct: 317 WTSQGELPVEIFLPSSYHFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSR 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,742
Number of Sequences: 5004
Number of extensions: 72116
Number of successful extensions: 243
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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