Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k15
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 705 PYYISTVKYHQPIQRMNSVFSLSYYFHLKL 616
           PY++S+ +YH P +    ++   Y+ H +L
Sbjct: 242 PYWMSSSQYHMPKEIRGQLY---YFLHKQL 268


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 705 PYYISTVKYHQPIQRMNSVFSLSYYFHLKL 616
           PY++S+ +YH P +    ++   Y+ H +L
Sbjct: 242 PYWMSSSQYHMPKEIRGQLY---YFLHKQL 268


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 744 NAWYTIFSSKIITCIASTDN 803
           NA  TIF + I T +AST +
Sbjct: 80  NAMKTIFKNTIFTNVASTSD 99


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 660 MNSVFSLSYYFHLK--LRSVLSEFCNYFASH 574
           + ++ S+ +Y   +   RS L ++CN  A+H
Sbjct: 338 LGAIGSIVFYIISRYVFRSALEDYCNIVATH 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,744
Number of Sequences: 438
Number of extensions: 6186
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)