Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k13
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    94   2e-20
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   2.3  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   9.4  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/75 (54%), Positives = 57/75 (76%)
 Frame = -2

Query: 773 RATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYIE 594
           +AT+ +Y   PD  REGGSIPVT+T +++  KNVLLLPMG GDD AHS NEK+++ N+++
Sbjct: 398 KATERVYGITPDFVREGGSIPVTVTFEQSLKKNVLLLPMGRGDDGAHSINEKLDLDNFLK 457

Query: 593 GIKLFAAYLFEVGKL 549
           GIKLF  Y+ E+  +
Sbjct: 458 GIKLFCTYVHELASV 472


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 404 SSLFISIYPSPGYERFHKIKSFGEITKTKND 496
           ++L+ ++YP+PGY   H  +S+ E+ + +N+
Sbjct: 120 ANLYCALYPNPGYSLCH--ESYFELKQNENE 148


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 601 TSKA*NCLPPTCSRSVNSPSKHRR 530
           TS+A N LPPT   S  +PSK  +
Sbjct: 19  TSRANNSLPPTPDSSPAAPSKKHK 42


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 716 SNLLRGTCPDRSDISA*WRGQ 778
           S+LL+GTC    D+S  W+ +
Sbjct: 320 SSLLKGTCSTSGDVSISWQAR 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,602
Number of Sequences: 5004
Number of extensions: 58868
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)