Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17k13
(789 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 24 1.9
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 23 2.4
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 23 2.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 23 2.4
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 4.3
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 4.3
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 4.3
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 9.9
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.8 bits (49), Expect = 1.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 319 NVNNLENSQELNSVKKKLLTVFLNSLSWAYY 227
N N S E+ K + FL LSW Y
Sbjct: 260 NANTSSQSAEIRIAKAAITICFLYVLSWTPY 290
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 106 FHIVLXLFYSVLLIHSI 56
FHI L + YS+LLI S+
Sbjct: 56 FHIGLAIIYSMLLIMSL 72
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 115 FSMFHIVLXLFYSVLLIHS 59
F+ HIV +FYSVL+I S
Sbjct: 33 FNEGHIVSIVFYSVLMIIS 51
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 106 FHIVLXLFYSVLLIHSI 56
FHI L + YS+LLI S+
Sbjct: 56 FHIGLAIIYSMLLIMSL 72
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 328 KYKNVNNLENSQELNSVKKKL 266
KY N NN N+ N+ KKL
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKL 110
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 328 KYKNVNNLENSQELNSVKKKL 266
KY N NN N+ N+ KKL
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKL 110
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 328 KYKNVNNLENSQELNSVKKKL 266
KY N NN N+ N+ KKL
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKL 110
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 328 KYKNVNNLENSQELNSVKKKL 266
KY N NN N+ N+ KKL
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKL 110
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 333 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 366
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 401 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 434
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 698 LQEASGKNVLLLPMGAGDDMAHSQNEKINVRNYI 597
LQE S K++L + DD+ H + YI
Sbjct: 401 LQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYI 434
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 646 SPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSG 744
+P P G+ +T + ASC++ ++ + G
Sbjct: 125 TPTPNGHPSTPIVYASCKLQAAAVDHQGSVLDG 157
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,538
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -