Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k09
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.26 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.60 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   0.80 
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   1.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   2.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   5.6  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   5.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   7.4  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    25   7.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   9.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    24   9.8  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 46  NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 162
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -2

Query: 186 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 82
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 233 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 84
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 192 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 94
           PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 46  PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 160  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 53
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 263 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 126
           P+T      T     T+  T+  +P  T+L  T T    T H+  T
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNST 118


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 260 TTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 87
           TT P  + T T ++ T  T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 99  TTIPTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 181 VIFG--RINDVRAVVNRFVAVSW 243
           V+FG  R+ DV   +N+FV V W
Sbjct: 64  VLFGFLRVKDVNTGLNKFVLVCW 86


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 189 KDYNPNGNGYEPIDNGAYYVDPPQGRP 109
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 337 RIRVRDENLSVGHSQQSEDENHEEFH 414
           R+R RD N S   S++S  + +  FH
Sbjct: 597 RLRTRDSNPSNTDSRESNHKKYNHFH 622


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 HVSGLTDYGPRKARIRVRDENL 363
           +V+GL DY PR  R    D+N+
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 222 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 136
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 265 PVYVRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFY 420
           P  V  SS  + + G +     KA   VR  N++ GH + S +    +  FY
Sbjct: 386 PREVSPSSGGYRMFGHSKPSSYKASGPVRPPNMATGHMRTSSEPTSYDSEFY 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,517
Number of Sequences: 5004
Number of extensions: 44083
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)