Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k06
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   183   3e-47
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  183 bits (445), Expect = 3e-47
 Identities = 90/161 (55%), Positives = 115/161 (71%), Gaps = 1/161 (0%)
 Frame = -2

Query: 637 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGF 461
           +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGF 351

Query: 460 VFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLS 281
           + LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL 
Sbjct: 352 LILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLM 410

Query: 280 LNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
            N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 411 YNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 762 YILILPGFGIISHII 718
           YILI+P FG++SHII
Sbjct: 251 YILIMPAFGVVSHII 265


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 713  KKEEKKKLWLFRNNLCYTSNWVIRIYCLSSSYIH 612
            K    + LWLF NN+  ++ W  ++    S+++H
Sbjct: 3951 KLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLH 3984


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 293 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 165
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,785
Number of Sequences: 5004
Number of extensions: 34413
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)