Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k02
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   1.8  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.4  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    27   4.1  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   4.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.5  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   7.2  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   7.2  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   7.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 31/123 (25%), Positives = 57/123 (46%)
 Frame = +2

Query: 224 PNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLLMPSTIL 403
           P++  S S  SS     +S S  SSS  +   +SS +S      ++S+ +      S+  
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300

Query: 404 TTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGTIPSTSDSKN 583
           T+  S I++ S S      +   +L+S+++ +   F      + P+ S  TI S+S S +
Sbjct: 301 TSTSSTISSSSSSSS----SFSSTLSSSSMSSSSSFS-----SSPTSSSSTISSSSSSPS 351

Query: 584 DNS 592
            +S
Sbjct: 352 SSS 354



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +2

Query: 275 NSWSEHSSSK--QACMFLSSVTSRGREFLNSSTRLRFLLMPSTILTTEYSPIAAPSCSFE 448
           +S+S+ ++S+   +  F S  +S   E+  SST    LL PS++ +       +   S  
Sbjct: 104 SSYSDPATSQLPSSTSFFSPTSS---EYTPSSTESSSLLDPSSVSSAILPSSTSVEVSIS 160

Query: 449 PAILATEDSLTSAT 490
            + L++ D LTS+T
Sbjct: 161 SSSLSSSDPLTSST 174



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 31/129 (24%), Positives = 52/129 (40%)
 Frame = +2

Query: 206 IGDGGSPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLL 385
           +    SP+S  S +  SS     +  S  SSS      LSS +S      +SS+      
Sbjct: 216 VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS----S 271

Query: 386 MPSTILTTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGTIPS 565
           + S+  ++  SP +  S     +  ++  + TS+TI +          T  S S+ +  S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331

Query: 566 TSDSKNDNS 592
            S S   +S
Sbjct: 332 FSSSPTSSS 340


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 778 PHPDVGHEHVRYILHLGR--PRALFHRR 701
           PH  +  EH+ Y   +GR    A+FHRR
Sbjct: 510 PHSSINPEHLNYFRFIGRVIGLAIFHRR 537


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 778 PHPDVGHEHVRYILHLGR--PRALFHRR 701
           PH  +  EH+ Y   +GR    A+FHRR
Sbjct: 491 PHSGINPEHLNYFKFIGRVIGLAIFHRR 518


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -3

Query: 598 VSTVIVLRVRSGRYRSQ*I*GTGDHNAELEAVVRADGGRRQ 476
           V  V  +R+ +GR  +  I G G HNA+  AVV   GGR Q
Sbjct: 70  VRKVARVRLSTGRSVTAYIPGIG-HNAQEHAVVLLRGGRAQ 109


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 778 PHPDVGHEHVRYILHLGRPRALFHRRVHRVLHNLASV 668
           P P+    ++ YI HL      F+RR H  L NL  +
Sbjct: 171 PKPEKNQTYINYITHLYEYLVSFYRRTH-PLSNLDKI 206


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 413  YSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLG 553
            Y+P A  SC + P   A E  +       H    FCIM+   +++LG
Sbjct: 1326 YNPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFCIMIGYTAFNLG 1372


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 378 NLSLVEEFKNSRPRLVTLDKNIQACLLD-ECSDHELRHRNIELPKDSLRKEFGDPPS 211
           N  L+E   N+   + ++ KN+   L + E +  ++  +N+   KD   K+FGDP S
Sbjct: 626 NSGLIETITNAIS-VHSIKKNLTKQLREAELAQGKIAGKNVVTLKDYFIKQFGDPNS 681


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 584 DNSGNHI---LVLEESLCISAWLFDS 652
           DNSGN +   L+L +S+C S+W  +S
Sbjct: 277 DNSGNQMQEALLLWDSICNSSWFSES 302


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 432 GAAMGEYSVVRIVDGIKRNLSLVEEFKNSRPRLVTLDKNIQAC 304
           G  +GE ++V     I  N++L   FK+S  R   + KN   C
Sbjct: 169 GIVIGETAIVEDGVSIWHNVTLGSTFKDSGARHPVIRKNAMLC 211


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 505 LLQVLHYGHRSLIFIGNDTVHFGLEER*Q-WKPYSGSGRIALHKRLVVRQRVVIQEQTRG 681
           LLQ + Y    L+ +GND   + +E+R +  +P    G+     R+ +  +  I +Q   
Sbjct: 308 LLQGMVYSDMDLLLLGNDADDYDVEDREEDIRPQHAKGK----SRITLNTQGPITQQGSS 363

Query: 682 YVERDEHVD 708
             + DE  D
Sbjct: 364 NADADELED 372


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
 Frame = +2

Query: 221 SPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLLMPSTI 400
           SP+S  S S  SS     +S S  SSS  +    SS +S      +SS+      +P T 
Sbjct: 154 SPSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212

Query: 401 LTTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGT---IPSTS 571
            T+     ++ S S   +      S +  T  +   F   + VT  S S  T   +PS++
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 323 SSVTSRGREFLNSSTRLRFLLMPSTILTTEYSPIAAPSCSFEPAILATEDSLTS 484
           S    + RE   SST+    +  S ++     P  APS S +P+  +T  S  S
Sbjct: 330 SFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTKSSNS 383


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 557 IPSTSDSKNDNSGNHILVL 613
           + ++S   NDN GNH L+L
Sbjct: 406 VNNSSSGHNDNEGNHSLIL 424


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 136 LFYELDT*MFYISIIDFISCYSIFILI 56
           L +  D+ +FY   I FIS YSIF+ +
Sbjct: 212 LIWLCDSFVFYSCCIVFISSYSIFLSV 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,563
Number of Sequences: 5004
Number of extensions: 69452
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)