Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17k02
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356... 38 0.007
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 34 0.12
05_03_0320 + 12353416-12353451,12353579-12353668,12353940-123540... 33 0.35
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 30 1.9
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 3.3
02_01_0511 - 3706123-3706166,3706436-3706492,3706734-3706818,370... 29 3.3
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 29 4.4
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 5.8
07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334 28 7.6
>01_06_1353 +
36533795-36533827,36533904-36533993,36535595-36535681,
36535775-36535843,36536472-36536552,36536641-36536712,
36536814-36536874,36536960-36537062,36537223-36537318,
36537394-36537440,36538052-36538299
Length = 328
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = -1
Query: 783 LLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYY 658
L+ IL W+M + I+A+ +HYS+DV +A+Y T L +++
Sbjct: 200 LIKILAWLMAIIQSLLIIASRKHYSVDVVVAWY-TVNLVVFF 240
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 774 ILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYY 658
+L W M + I+A+ +HYS+DV +A+Y T L +++
Sbjct: 168 LLAWFMAIVQSLLIIASRKHYSVDVVVAWY-TVNLVVFF 205
>05_03_0320 +
12353416-12353451,12353579-12353668,12353940-12354026,
12354156-12354224,12355179-12355313,12355746-12355826,
12355908-12355979,12356071-12356131,12356234-12356336,
12356448-12356543,12356620-12356666,12356747-12356871,
12356962-12357036
Length = 358
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -1
Query: 792 SLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYY 658
++ + +L W + + I+A+ +HYS+DV +A+Y T L +++
Sbjct: 243 NIRFIKMLAWCIAIAQSLLIIASRKHYSVDVVVAWY-TVNLVVFF 286
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 280 VVRALV-Q*TSLYVLVERDQSRPGVFELFDEAQVPLDAVDDPD 405
VVR +V + L L D +PGV F EA L AVDDP+
Sbjct: 23 VVRGVVLKRGDLGSLPSEDNGKPGVLLGFGEAAAALPAVDDPE 65
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 564 DGIVPNEYEGPVTIMQNLKQWCVQMVADVKESS 466
DG + Y G +++NL+Q CV VA+ + +S
Sbjct: 269 DGDLAAGYSGRDVVLENLRQLCVHRVANARNAS 301
>02_01_0511 -
3706123-3706166,3706436-3706492,3706734-3706818,
3707424-3707472,3707566-3707639,3707775-3707849,
3708186-3708240,3708318-3708391,3708607-3708753,
3709419-3709493,3709527-3709648,3709749-3709929
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 248 FGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRL 373
F ++F+ NSW++H +SK +C LS+ T E + T L
Sbjct: 114 FIGTVFVWYNSWTDH-ASKSSCSSLSTSTQESEEDVTVGTLL 154
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 29.1 bits (62), Expect = 4.4
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Frame = -1
Query: 636 ALMQSDSSRTRIWFPLLSFFESEVDGIVPNEYEGPVTIMQNLKQWCVQMV--ADVKESSV 463
AL + DS R + + S + +D I P G T +Q ++ V + A KES++
Sbjct: 42 ALAERDSLLYRSYIAIGSH-QLVIDEIGP----GAATPLQAVRLLTVYLSGGAGGKESAI 96
Query: 462 AKIAGSKLQEGAAMGEYSVVRIVDGI----KRNLSLVEEFKNSRPRLVTLDKNIQACLLD 295
K+ ++L A+G ++R+V G +R+ + + NS + L N+Q CL
Sbjct: 97 RKL--NELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQM 154
Query: 294 ECSDH 280
SDH
Sbjct: 155 HRSDH 159
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = -1
Query: 702 VFIAFYITSRLFLYYHTLSNNQALMQSDSSRTRIWFPLLSFFESEVDGIVPNEYEGPVTI 523
+FI RL L + + L + +S+ ++WFPL + D I NE ++I
Sbjct: 3555 LFIIVSSWQRLELECWPILLQEVLEKYESNALKLWFPLRALLTQSCD-ISKNE---EISI 3610
Query: 522 MQNLKQWC-VQMVADVKESSVAKIA-GSKLQEGAAMGEYS 409
+++++++ + + K +A +L +GA +G YS
Sbjct: 3611 IKSVEEFVQTSSIGEFKRRLHLLLAFHGELSDGAGVGAYS 3650
>07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334
Length = 180
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 611 LEESLCISAWLFDSVW*YRNRREVM*NAMNTSME*CSWAAKMKNI 745
+EE + A L+ +W +R R + + +N CS+ K KN+
Sbjct: 106 VEEEATLVAMLYKELWWHRERSKPVVKDVNMQGSRCSYICKGKNV 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,036,534
Number of Sequences: 37544
Number of extensions: 460908
Number of successful extensions: 1515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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