Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17k02
(807 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein. 142 1e-33
AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif dom... 142 1e-33
BC042899-1|AAH42899.1| 413|Homo sapiens sphingomyelin synthase ... 96 2e-19
AY280959-1|AAP37279.1| 413|Homo sapiens MOB protein protein. 96 2e-19
AB154421-1|BAD16809.1| 413|Homo sapiens sphingomyelin synthase ... 96 2e-19
BC041369-1|AAH41369.1| 365|Homo sapiens sphingomyelin synthase ... 91 3e-18
BC028705-1|AAH28705.1| 365|Homo sapiens MGC26963 protein protein. 91 3e-18
X17033-1|CAA34894.1| 1181|Homo sapiens protein ( Human mRNA for ... 33 0.92
AF512556-1|AAM34795.1| 1181|Homo sapiens integrin, alpha 2 (CD49... 33 0.92
U63131-1|AAB04798.1| 378|Homo sapiens CDC37 homolog protein. 31 4.9
U43077-1|AAB63979.1| 378|Homo sapiens CDC37 homolog protein. 31 4.9
CR542249-1|CAG47045.1| 378|Homo sapiens CDC37 protein. 31 4.9
BT006796-1|AAP35442.1| 378|Homo sapiens CDC37 cell division cyc... 31 4.9
BC008793-1|AAH08793.1| 378|Homo sapiens cell division cycle 37 ... 31 4.9
BC000083-1|AAH00083.1| 378|Homo sapiens cell division cycle 37 ... 31 4.9
AY864824-1|AAW34362.1| 378|Homo sapiens CDC37 cell division cyc... 31 4.9
>BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein.
Length = 449
Score = 142 bits (345), Expect = 1e-33
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EYT RS LH L+WV+N+FGIFFILAAHEHYSIDVFIAFYIT+RLFLYYHTL+N +A
Sbjct: 348 EYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAYQ 407
Query: 627 QSDSSRTRIWFPLLSFFESEVDGIVPNEYEGP 532
Q S R RIWFP+ SFFE V+G VPNEY P
Sbjct: 408 Q--SRRARIWFPMFSFFECNVNGTVPNEYCWP 437
>AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif domain
containing 8 protein.
Length = 478
Score = 142 bits (345), Expect = 1e-33
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EYT RS LH L+WV+N+FGIFFILAAHEHYSIDVFIAFYIT+RLFLYYHTL+N +A
Sbjct: 377 EYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAYQ 436
Query: 627 QSDSSRTRIWFPLLSFFESEVDGIVPNEYEGP 532
Q S R RIWFP+ SFFE V+G VPNEY P
Sbjct: 437 Q--SRRARIWFPMFSFFECNVNGTVPNEYCWP 466
>BC042899-1|AAH42899.1| 413|Homo sapiens sphingomyelin synthase 1
protein.
Length = 413
Score = 95.9 bits (228), Expect = 2e-19
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R L+ H + W++++ GIF IL AH+HY++DV +A+YIT+RLF +YHT++N Q L
Sbjct: 298 EYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRLFWWYHTMANQQVLK 357
Query: 627 QSDSSR--TRI-WFPLLSFFESEVDGIVPNEYEGP 532
++ R+ W+ +FE V GIVP Y P
Sbjct: 358 EASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWP 392
>AY280959-1|AAP37279.1| 413|Homo sapiens MOB protein protein.
Length = 413
Score = 95.9 bits (228), Expect = 2e-19
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R L+ H + W++++ GIF IL AH+HY++DV +A+YIT+RLF +YHT++N Q L
Sbjct: 298 EYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRLFWWYHTMANQQVLK 357
Query: 627 QSDSSR--TRI-WFPLLSFFESEVDGIVPNEYEGP 532
++ R+ W+ +FE V GIVP Y P
Sbjct: 358 EASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWP 392
>AB154421-1|BAD16809.1| 413|Homo sapiens sphingomyelin synthase
protein.
Length = 413
Score = 95.9 bits (228), Expect = 2e-19
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R L+ H + W++++ GIF IL AH+HY++DV +A+YIT+RLF +YHT++N Q L
Sbjct: 298 EYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRLFWWYHTMANQQVLK 357
Query: 627 QSDSSR--TRI-WFPLLSFFESEVDGIVPNEYEGP 532
++ R+ W+ +FE V GIVP Y P
Sbjct: 358 EASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWP 392
>BC041369-1|AAH41369.1| 365|Homo sapiens sphingomyelin synthase 2
protein.
Length = 365
Score = 91.5 bits (217), Expect = 3e-18
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R + H++ W+++ GI IL AHEHY+IDV IA+YIT+RLF +YH+++N + L
Sbjct: 242 EYSPRHFWWYHLICWLLSAAGIICILVAHEHYTIDVIIAYYITTRLFWWYHSMANEKNLK 301
Query: 627 QSDSSR--TRI-WFPLLSFFESEVDGIVPNEYEGPVT 526
S + +R WFP+ FFE V G +P + P++
Sbjct: 302 VSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFSWPLS 338
>BC028705-1|AAH28705.1| 365|Homo sapiens MGC26963 protein protein.
Length = 365
Score = 91.5 bits (217), Expect = 3e-18
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R + H++ W+++ GI IL AHEHY+IDV IA+YIT+RLF +YH+++N + L
Sbjct: 242 EYSPRHFWWYHLICWLLSAAGIICILVAHEHYTIDVIIAYYITTRLFWWYHSMANEKNLK 301
Query: 627 QSDSSR--TRI-WFPLLSFFESEVDGIVPNEYEGPVT 526
S + +R WFP+ FFE V G +P + P++
Sbjct: 302 VSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFSWPLS 338
>X17033-1|CAA34894.1| 1181|Homo sapiens protein ( Human mRNA for
integrin alpha-2 subunit. ).
Length = 1181
Score = 33.5 bits (73), Expect = 0.92
Identities = 28/91 (30%), Positives = 41/91 (45%)
Frame = +2
Query: 203 KIGDGGSPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFL 382
KIG S SF+SE+F + L + S S C +L V +G F+N +TR+
Sbjct: 1027 KIGQTSSSVSFKSENFRHTKEL---NCRTASCSNVTC-WLKDVHMKGEYFVNVTTRIWNG 1082
Query: 383 LMPSTILTTEYSPIAAPSCSFEPAILATEDS 475
S+ T AA ++ P I ED+
Sbjct: 1083 TFASSTFQTVQLTAAAEINTYNPEIYVIEDN 1113
>AF512556-1|AAM34795.1| 1181|Homo sapiens integrin, alpha 2 (CD49B,
alpha 2 subunit of VLA-2 receptor) protein.
Length = 1181
Score = 33.5 bits (73), Expect = 0.92
Identities = 28/91 (30%), Positives = 41/91 (45%)
Frame = +2
Query: 203 KIGDGGSPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFL 382
KIG S SF+SE+F + L + S S C +L V +G F+N +TR+
Sbjct: 1027 KIGQTSSSVSFKSENFRHTKEL---NCRTASCSNVTC-WLKDVHMKGEYFVNVTTRIWNG 1082
Query: 383 LMPSTILTTEYSPIAAPSCSFEPAILATEDS 475
S+ T AA ++ P I ED+
Sbjct: 1083 TFASSTFQTVQLTAAAEINTYNPEIYVIEDN 1113
>U63131-1|AAB04798.1| 378|Homo sapiens CDC37 homolog protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>U43077-1|AAB63979.1| 378|Homo sapiens CDC37 homolog protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>CR542249-1|CAG47045.1| 378|Homo sapiens CDC37 protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>BT006796-1|AAP35442.1| 378|Homo sapiens CDC37 cell division cycle
37 homolog (S. cerevisiae) protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>BC008793-1|AAH08793.1| 378|Homo sapiens cell division cycle 37
homolog (S. cerevisiae) protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>BC000083-1|AAH00083.1| 378|Homo sapiens cell division cycle 37
homolog (S. cerevisiae) protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
>AY864824-1|AAW34362.1| 378|Homo sapiens CDC37 cell division cycle
37 homolog (S. cerevisiae) protein.
Length = 378
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 186 FIYFFSKLATADRRILFGANPLEVQCFCDVIRGQSTRPVNK 308
F FF+K+ TADR+ + G N E++ F + +RG++ + K
Sbjct: 234 FRQFFTKIKTADRQYMEGFND-ELEAFKERVRGRAKLRIEK 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,025,153
Number of Sequences: 237096
Number of extensions: 2345177
Number of successful extensions: 5752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5743
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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