Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17k02
(807 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical pr... 81 9e-16
Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical pr... 81 9e-16
U41023-2|AAA82341.1| 335|Caenorhabditis elegans Sphingomyelin s... 57 1e-08
AF106576-6|AAC78178.1| 381|Caenorhabditis elegans Hypothetical ... 42 5e-04
AC084153-2|AAK84597.1| 340|Caenorhabditis elegans Sphingomyelin... 42 5e-04
AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical ... 30 2.2
Z82069-2|CAB04904.1| 315|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical ... 29 3.0
AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical ... 29 3.9
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 29 5.2
Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical pr... 28 9.0
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 112 bits (270), Expect = 2e-25
Identities = 54/95 (56%), Positives = 62/95 (65%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EYT LH TWV+N F IF ILAAHEHYSIDVFIAFYI+SR+FLYYH + N A +
Sbjct: 343 EYTPADWTGLHTFTWVLNCFAIFLILAAHEHYSIDVFIAFYISSRMFLYYHAYAYNHAGI 402
Query: 627 QSDSSRTRIWFPLLSFFESEVDGIVPNEYEGPVTI 523
+ R R WFPL FFE G V NE+ P+ I
Sbjct: 403 TATDYRMRTWFPLGWFFEYGSQGKVENEFSLPINI 437
>Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical
protein H21P03.3b protein.
Length = 490
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/99 (33%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R Y+LH L+W++ G+ F++ +H HY+IDV ++++ +R+F YHT + + ++
Sbjct: 349 EYSPRRFYILHWLSWLVCSVGVIFLVLSHGHYTIDVILSYFACTRVFWAYHTQAAHPSIR 408
Query: 627 QS--DSSRTRIWFPLLSFFESEVDGIVPNEYEGPVTIMQ 517
S + WFPLL +FE ++ VP ++ P++ Q
Sbjct: 409 LSVQNHQAKEFWFPLLRWFEGDIRRPVPRRFDCPISYSQ 447
>Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical
protein H21P03.3a protein.
Length = 450
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/99 (33%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
EY+ R Y+LH L+W++ G+ F++ +H HY+IDV ++++ +R+F YHT + + ++
Sbjct: 309 EYSPRRFYILHWLSWLVCSVGVIFLVLSHGHYTIDVILSYFACTRVFWAYHTQAAHPSIR 368
Query: 627 QS--DSSRTRIWFPLLSFFESEVDGIVPNEYEGPVTIMQ 517
S + WFPLL +FE ++ VP ++ P++ Q
Sbjct: 369 LSVQNHQAKEFWFPLLRWFEGDIRRPVPRRFDCPISYSQ 407
>U41023-2|AAA82341.1| 335|Caenorhabditis elegans Sphingomyelin
synthase protein 2 protein.
Length = 335
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Frame = -1
Query: 807 EYTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALM 628
+YT R L +L + + GI ++ + HY++DV IA+++TS +F YH + +
Sbjct: 223 QYTPRGLVILRYIAAPITFLGIAALVVSGGHYTMDVLIAYWLTSHVFWSYHQIFEMRKDD 282
Query: 627 QSDSSRTRI-WFPLLSFFESEV-DGIVPNEYEGPV 529
+ + +R+ WF L +FES+V DG + N++ P+
Sbjct: 283 RPQAPLSRLWWFWLCYWFESDVADGKLVNKWNWPL 317
>AF106576-6|AAC78178.1| 381|Caenorhabditis elegans Hypothetical
protein W07E6.3 protein.
Length = 381
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -1
Query: 804 YTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTL--SNNQAL 631
Y + L L + V+ +F IL A +HY ID+ + + +++R+F+ YH L S +
Sbjct: 269 YAPQRLQPLSHIYHVLAFTALFSILLARKHYMIDIVLGYTVSTRIFMEYHALAASYHNRT 328
Query: 630 MQSDSSRTRIWFPLLSFFESEVDGIVPN 547
+++ W + FE + + N
Sbjct: 329 FETNPLAWSFWSFFIPIFECDAPANMHN 356
>AC084153-2|AAK84597.1| 340|Caenorhabditis elegans Sphingomyelin
synthase protein 3 protein.
Length = 340
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = -1
Query: 804 YTSRSLYLLHILTWVMNMFGIFFILAAHEHYSIDVFIAFYITSRLFLYYHTLSNNQALMQ 625
Y +S+ L ++ V + G+ + + HY+IDV IA+++++ +F YH M+
Sbjct: 197 YLPKSIKPLQWVSHVACLIGMICMTISRTHYTIDVVIAYWLSNMVFRMYHAYCEVDMCME 256
Query: 624 SDSSRTRIWFPLLSFFESEVDGIVPNEYE 538
S W+P E D IVP E
Sbjct: 257 RRKSILYSWWPCRIVDWLEQD-IVPGRLE 284
>AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical
protein Y45F10B.14 protein.
Length = 320
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 691 VLHNLASVPVLPHAVEQPGAYAERFFQNQNMVSTVIV 581
+L L S+ V+ + +EQ G YA FF+N M V++
Sbjct: 240 LLPTLYSINVVMYVLEQSGIYASPFFENFIMSGLVLI 276
>Z82069-2|CAB04904.1| 315|Caenorhabditis elegans Hypothetical
protein W04A8.3 protein.
Length = 315
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 296 SSKQACMFLSSVTSRGREFLNSSTRLRFLLMPSTIL 403
SSKQA FL + +GR S+T ++ L+PS ++
Sbjct: 198 SSKQANKFLKKLKEKGRLMSFSATNMKSSLVPSAVV 233
>AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical
protein F53C3.6a protein.
Length = 250
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 209 GDGGSPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLLM 388
G GG FRS SS R S +SSS + +F +S TSR F + TR ++
Sbjct: 50 GRGGGGGGFRSGGARSSFSSFRGGSSHYSSSFRQNVFHTSSTSRTFVF-SPMTRTIVIIS 108
Query: 389 PSTILTTE 412
P++ + E
Sbjct: 109 PASPMIYE 116
>AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical
protein C54F6.8 protein.
Length = 349
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 165 IITYKTYFIYFFSKLATADRRILFGANPLEVQCFCDVIRG 284
II Y T F +F KL D+ LF AN FC +RG
Sbjct: 165 IIEYFTSF-HFIDKLNNDDKMKLFQANSFRSNIFCGGMRG 203
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +1
Query: 601 YSGSGRIALHKRLVVRQRVVIQEQTRGYVERDEHVDGIMLVGGQDEEYTEHVHDPRQDVE 780
YSG I K +V ++ VI E GY D+ D I DEEY E + +VE
Sbjct: 62 YSGEYTITTMKPVVFPKKKVIFEH--GYGIEDDIEDEIDDEESDDEEYEESGNGSEDEVE 119
Query: 781 E 783
E
Sbjct: 120 E 120
>AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical
protein T10D4.6 protein.
Length = 796
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 386 MPSTILTTEYSPIAAPSCSFEPAILATEDS 475
+P T+ + P+A+ SCS PA+LA+ D+
Sbjct: 614 LPPTVDVSSPPPVASSSCSPYPALLASADA 643
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 519 QNLKQWCVQMVADVKESSVAKIAGSKLQEGAAMGEYSVV--RIVDGIK-RNLSLVEE 358
+ ++ W V ++A + ++A G + EGA G+ +++ R VDG + L LV+E
Sbjct: 118 KKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKE 174
>Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical
protein ZK945.5 protein.
Length = 250
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 306 CLLDECSDH-ELRHRNIELPKDSLRK 232
C LD+CSDH E H ++ L LR+
Sbjct: 181 CFLDKCSDHFEHEHSSLHLELPELRR 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,402
Number of Sequences: 27780
Number of extensions: 396001
Number of successful extensions: 1317
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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