Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k01
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0376 - 22474473-22476947                                         30   2.5  
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498...    28   7.5  
04_04_0213 - 23672541-23672558,23672706-23672855,23672932-236730...    28   9.9  
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    28   9.9  

>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 375 SSFKEYMCPLA*ASS--SSVGETLRKEVQLPTITYTV 271
           SSF E++C +  +    S +GE L+K+V+  T+ YT+
Sbjct: 482 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 518


>01_05_0282 -
           20347915-20348874,20348968-20349012,20349568-20349816,
           20350393-20350581,20351051-20351155,20351165-20351488,
           20351493-20351555
          Length = 644

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 370 LQGVHVPPRLSVELIGWGNTPQGGAVTDDNLYGLSLTTVDRYTCRSKYED 221
           L+G H   RL   L+GW N PQ   V +D    ++ T  D+   R K ++
Sbjct: 55  LEGYHGITRLKWHLVGWQNRPQCLNVPED----VAKTIRDKMISREKQKE 100


>04_04_0213 -
           23672541-23672558,23672706-23672855,23672932-23673017,
           23673083-23673227
          Length = 132

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 262 TTVDRYTCRSKYEDREVTNTMLCFGLP-REGGRDFFTRDVG 143
           TT   YT +   E ++VT   L +G+  R GGRD    D G
Sbjct: 59  TTATMYTAKELREKQDVTKGFLIWGVAGRGGGRDHDDDDDG 99


>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 623 TLLDPNVAQGDFNLSQTGAVTDRHSSAKVVG*DAASCCEQ 742
           T+L   +A G  +LSQ GA+T R ++ + +      CC++
Sbjct: 298 TVLSVTLAIGSHHLSQQGAITKRMTAIEEMAGMDVLCCDK 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,097,232
Number of Sequences: 37544
Number of extensions: 530747
Number of successful extensions: 1179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)