Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k01
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    36   0.025
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    32   0.55 
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp...    28   6.7  
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical...    28   6.7  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    28   6.7  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z69718-4|CAA93537.1|  147|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
 Frame = -1

Query: 628 QCAGAVLTNFHILSVATCFSGAXYRPDTRXIRLGSDIRNEGGLIVNVLLANNHHSFDPTN 449
           +C G+++    +L+ A CF+    RP +  +R+G   R+  G    V   + H  ++   
Sbjct: 83  RCGGSLIDPNFVLTAAHCFA-KDRRPTSYSVRVGGH-RSGSGSPHRVTAVSIHPWYNIGF 140

Query: 448 MAS-DISVVRLSSAITLGGNIQQASVILQGVH-VPPRLSVELIGWGNTPQGGAVTDDNLY 275
            +S D +++R+   +      +   + L  +  V  RL V + GWG+T +G +++   L 
Sbjct: 141 PSSYDFAIMRIHPPVNTSTTARP--ICLPSLPAVENRLCV-VTGWGSTIEGSSLSAPTLR 197

Query: 274 GLSLTTVDRYTCRS--KYEDREVTNTMLCFGLPREGGRDFFTRDVGAPV 134
            + +  +    C S   Y  R    +MLC G    G  D    D G P+
Sbjct: 198 EIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY-SYGKIDSCQGDSGGPL 245


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = -1

Query: 481 ANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGNTPQG 302
           AN      P     D ++V L   +T   N+Q   V         +LS+E  G+G  P  
Sbjct: 274 ANRTKKIPPQYYTDDFAIVHLYEELTFSSNVQSVCVADDETQPNDKLSLEYFGFGLNPP- 332

Query: 301 GAVTDDNLYGLSLTTVDRY 245
              +D N  G+  T   RY
Sbjct: 333 ---SDINQNGVDNTGQLRY 348


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +2

Query: 506 AFISYVRTETNTTSIG-PVXGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 670
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 703 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 762

Query: 671 -TGAVTDRHSSAKVV 712
            TG  +D+ +SA +V
Sbjct: 763 ATGQQSDQSNSANMV 777


>Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical
           protein F39D8.1b protein.
          Length = 919

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +2

Query: 506 AFISYVRTETNTTSIG-PVXGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 670
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 698 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 757

Query: 671 -TGAVTDRHSSAKVV 712
            TG  +D+ +SA +V
Sbjct: 758 ATGQQSDQSNSANMV 772


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +2

Query: 506 AFISYVRTETNTTSIG-PVXGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 670
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 721 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 780

Query: 671 -TGAVTDRHSSAKVV 712
            TG  +D+ +SA +V
Sbjct: 781 ATGQQSDQSNSANMV 795


>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 218  PVFVFAPTGVSVYCGEAQTV*VIVGNCTSLRSV 316
            PV V   TG+ +Y G   +    +GNC++ RS+
Sbjct: 1008 PVHVRVHTGLPIYNGHTYSTSTCLGNCSNRRSL 1040


>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y105E8A.12b protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 218  PVFVFAPTGVSVYCGEAQTV*VIVGNCTSLRSV 316
            PV V   TG+ +Y G   +    +GNC++ RS+
Sbjct: 1008 PVHVRVHTGLPIYNGHTYSTSTCLGNCSNRRSL 1040


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 388 QQASVILQGVHVPPRLSVELIGWGNTPQGGAVTDDN 281
           Q A+ I + +  PP  S  LI   N P GG V + N
Sbjct: 365 QPATSIQESLSAPPGASPNLIALVNQPNGGQVPNQN 400


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
           protein H20J18.1a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 388 QQASVILQGVHVPPRLSVELIGWGNTPQGGAVTDDN 281
           Q A+ I + +  PP  S  LI   N P GG V + N
Sbjct: 365 QPATSIQESLSAPPGASPNLIALVNQPNGGQVPNQN 400


>Z69718-4|CAA93537.1|  147|Caenorhabditis elegans Hypothetical
           protein W06D11.5 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 727 SCISANNLGTRVPISDRPSLAQVEVALGNVWIQQCAGAVLTNFHIL 590
           SC+S         + DR  L +V + + N W+Q+      T FH+L
Sbjct: 52  SCLSRRESFVLQEVKDRQMLLKVGLKICNEWLQEGNSNRPTPFHLL 97


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 509 RRLDRECVTCQ*PSLIRSHEYGQRYFRCPS*FSNH-PW 399
           +++DR C TC  P    SH   Q   +C   F +H PW
Sbjct: 537 KQIDRYCFTCWIPKTSSSHHCSQ-CDKCVDGFDHHCPW 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,925
Number of Sequences: 27780
Number of extensions: 421521
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)