Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17k01
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    31   0.009
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
 Frame = -1

Query: 442 SDISVVRLSSAITLGGNIQQASVILQG-VHVPPRLSVELIGWGNTPQGGAVTDDNLYGLS 266
           +DI++++    I  G  +  A +  Q  +       V ++GWG+T   G ++   L   +
Sbjct: 256 NDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHI-LQKTT 314

Query: 265 LTTVDRYTCRSKYEDREVTNTMLCFGLPREGGRDFFTRDVGAPVFYQN 122
           L  + +  C  KY    + N M  +      G+D    D G PV +QN
Sbjct: 315 LNMLTQVECY-KYYGNIMVNAMCAYAK----GKDACQMDSGGPVLWQN 357


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = -1

Query: 520 IRNEGGLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGN 392
           IRN  GL+            DP        + R+++  T G N
Sbjct: 383 IRNRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGRN 425


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 472 GYWQVTHSRSSRLHFVCQNRDEY 540
           G W+V  + SSR+ + C   D +
Sbjct: 102 GLWRVCVAISSRMEYECSRIDYF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,777
Number of Sequences: 438
Number of extensions: 5452
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)