Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17j22
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.083
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.58
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.4
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.4
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.8
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 2.4
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.4
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 7.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 7.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 7.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 738 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 580
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = -1
Query: 735 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 556
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 555 AAAIPEI---KTPEAADAPKLADNPVDEDK 475
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/88 (27%), Positives = 37/88 (42%)
Frame = -1
Query: 735 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 556
KVEEP+ + ++ + + TV + +E+ P A S VKK P+ E
Sbjct: 462 KVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKK---EPSEEKK 518
Query: 555 AAAIPEIKTPEAADAPKLADNPVDEDKP 472
E P+A AP V+E +P
Sbjct: 519 LEVSDE--APKA--APLAESKKVEEKEP 542
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -1
Query: 708 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT 529
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 528 PEAADAPKLADNPVD 484
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 768 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 598
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 597 --MVKKIDL----APTVESDAAAIPEIKTP 526
M K+ DL PT ++++A++P+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -1
Query: 702 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI-KTP 526
+K+E A +A EE S + A K + V SDA + + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 525 EAADAPKLADNPVDEDKPAD 466
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 728 KNQLLSLKIQKLKYKLPSLKFQKKKNL 648
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 169 VGSGARVNVFAASSGRVSKTV 231
V SGARV ++ ASS V KT+
Sbjct: 57 VTSGARVQIYGASSRSVKKTI 77
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 762 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 616
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 675 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 520
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 735 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 613
K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 56 KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 756 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 619
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -1
Query: 759 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 622
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,262
Number of Sequences: 5004
Number of extensions: 37799
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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