Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17j21
(737 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007110-1|AAH07110.2| 310|Homo sapiens C11orf54 protein protein. 146 5e-35
AL136605-1|CAB66540.1| 315|Homo sapiens hypothetical protein pr... 146 5e-35
CR533538-1|CAG38569.1| 315|Homo sapiens PTD012 protein. 144 3e-34
BC012298-1|AAH12298.1| 265|Homo sapiens chromosome 11 open read... 61 4e-09
AF079564-1|AAC28392.1| 353|Homo sapiens ubiquitin-specific prot... 31 3.3
AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein. 31 4.3
AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein. 31 4.3
AK096803-1|BAC04865.1| 188|Homo sapiens protein ( Homo sapiens ... 30 10.0
AK057259-1|BAB71399.1| 188|Homo sapiens protein ( Homo sapiens ... 30 10.0
>BC007110-1|AAH07110.2| 310|Homo sapiens C11orf54 protein protein.
Length = 310
Score = 146 bits (355), Expect = 5e-35
Identities = 86/227 (37%), Positives = 120/227 (52%), Gaps = 3/227 (1%)
Frame = -1
Query: 737 GAGAGPWPYLGVNCE--GIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDET 564
GAGAGP+ LG N E ++ + G+ V+P Y ++ +
Sbjct: 91 GAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKC---HDF 147
Query: 563 RTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAG 384
+ ALL N +EG+PGKVI+V AK RTG NF+T +RETL+ HYG+K +G+GG F+++ G
Sbjct: 148 QCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKG 207
Query: 383 RGYFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXX 207
+ H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 208 KVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTH 263
Query: 206 XXXXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 66
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 264 FFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 310
>AL136605-1|CAB66540.1| 315|Homo sapiens hypothetical protein
protein.
Length = 315
Score = 146 bits (355), Expect = 5e-35
Identities = 86/227 (37%), Positives = 120/227 (52%), Gaps = 3/227 (1%)
Frame = -1
Query: 737 GAGAGPWPYLGVNCE--GIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDET 564
GAGAGP+ LG N E ++ + G+ V+P Y ++ +
Sbjct: 96 GAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKC---HDF 152
Query: 563 RTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAG 384
+ ALL N +EG+PGKVI+V AK RTG NF+T +RETL+ HYG+K +G+GG F+++ G
Sbjct: 153 QCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKG 212
Query: 383 RGYFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXX 207
+ H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 213 KVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTH 268
Query: 206 XXXXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 66
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 269 FFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 315
>CR533538-1|CAG38569.1| 315|Homo sapiens PTD012 protein.
Length = 315
Score = 144 bits (349), Expect = 3e-34
Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 3/227 (1%)
Frame = -1
Query: 737 GAGAGPWPYLGVNCE--GIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDET 564
GAGAGP+ LG N E ++ + G+ V+P Y ++ +
Sbjct: 96 GAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKC---HDF 152
Query: 563 RTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAG 384
+ ALL N +EG+PGKVI+V AK RTG N +T +RETL+ HYG+K +G+GG F+++ G
Sbjct: 153 QCALLANLFASEGQPGKVIEVKAKRRTGPLNLVTCMRETLEKHYGNKPIGMGGTFIIQKG 212
Query: 383 RGYFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXX 207
+ H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 213 KVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTH 268
Query: 206 XXXXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 66
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 269 FFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 315
>BC012298-1|AAH12298.1| 265|Homo sapiens chromosome 11 open reading
frame 54 protein.
Length = 265
Score = 61.3 bits (142), Expect = 4e-09
Identities = 35/98 (35%), Positives = 45/98 (45%)
Frame = -1
Query: 359 DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXX 180
+FS PL SD V+ WLH++E+ AP LR++
Sbjct: 172 EFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHY 231
Query: 179 XXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 66
DTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 232 ----DTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 265
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -1
Query: 737 GAGAGPWPYLGVNCE--GIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDET 564
GAGAGP+ LG N E ++ + G+ V+P Y ++ +
Sbjct: 96 GAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEK---CHDF 152
Query: 563 RTALLGNYLLTEGKPGK 513
+ ALL N +EG+PGK
Sbjct: 153 QCALLANLFASEGQPGK 169
>AF079564-1|AAC28392.1| 353|Homo sapiens ubiquitin-specific
protease UBP41 protein.
Length = 353
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 446 LKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRAPLCSDAA--VDSWLHYFELDAP 285
+ H G + G A+ G G +H D S P+ S D++LH++EL +P
Sbjct: 294 VSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLHFYELASP 349
>AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein.
Length = 2248
Score = 31.1 bits (67), Expect = 4.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 401 FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 309
+ L A RG FH++ F +PLC +AA +W+
Sbjct: 1779 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1808
>AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein.
Length = 2046
Score = 31.1 bits (67), Expect = 4.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 401 FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 309
+ L A RG FH++ F +PLC +AA +W+
Sbjct: 1577 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1606
>AK096803-1|BAC04865.1| 188|Homo sapiens protein ( Homo sapiens
cDNA FLJ39484 fis, clone PROST2014925. ).
Length = 188
Score = 29.9 bits (64), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 545 FRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFW 646
FR W R W ++ GG R P LL+ L W
Sbjct: 28 FRGGMLWGRPWDSMRGGHRQHPHPLLVAPAVLRW 61
>AK057259-1|BAB71399.1| 188|Homo sapiens protein ( Homo sapiens
cDNA FLJ32697 fis, clone TESTI2000372. ).
Length = 188
Score = 29.9 bits (64), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 545 FRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFW 646
FR W R W ++ GG R P LL+ L W
Sbjct: 28 FRGGMLWGRPWDSMRGGHRQHPHPLLVAPAVLRW 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,977,139
Number of Sequences: 237096
Number of extensions: 2110177
Number of successful extensions: 6828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6821
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -