Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17j11
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   2.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 320 LHSIHEDGSVVEGYFAWSLMDNFEWDDG 237
           +HSI +  S+V    A+  +DN  W DG
Sbjct: 20  IHSISD--SLVNAKLAFGFLDNSVWADG 45


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -2

Query: 284 GYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPED 117
           G+ A  L   F W     S  G +++  E+P      K     YS V   + LP D
Sbjct: 479 GFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNTKPIDMEYSSVAQQQFLPHD 534


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 298 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 206
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 290 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 298 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 206
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 380 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 410


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 837 T*DRYSRRQRCSR 799
           T  RYSR +RCSR
Sbjct: 227 TSSRYSRERRCSR 239


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 680 RSRLPKFTTEEVEY 639
           +  LPK+TTEE+ +
Sbjct: 432 KENLPKYTTEELNF 445


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 680 RSRLPKFTTEEVEY 639
           +  LPK+TTEE+ +
Sbjct: 432 KENLPKYTTEELNF 445


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 680 RSRLPKFTTEEVEY 639
           +  LPK+TTEE+ +
Sbjct: 58  KENLPKYTTEELNF 71


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = -2

Query: 596 TYLLTMADKEVGSIPSHQNDVGIVRVQDPNWPSESSSTWLKVVPYGFRKLLQWITKTYSG 417
           T ++    + V  +P H+    I+ + D    ++ +     VVP+ F   ++ I     G
Sbjct: 52  TEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQF---IKRICSALFG 108

Query: 416 YPIIVTENGYADFNGLDDKT--RVSYYSHYLNALLH 315
             I  T  G +   G D K    +   SH ++  LH
Sbjct: 109 -KIKPTAIGLSLIKGFDKKQGGGIELISHIISKQLH 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,581
Number of Sequences: 438
Number of extensions: 5525
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)