Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17j10
(609 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 28 0.062
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 25 0.77
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 4.1
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 22 4.1
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 22 4.1
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 5.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 5.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 7.1
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 7.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.4
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 28.3 bits (60), Expect = 0.062
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 345 HHSSSNTCPSTRPICSCCKRNVGS-HSICYHICLLQLEH 458
H + +T PS PIC+ CKR S +S+ H + +H
Sbjct: 21 HIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQH 59
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 24.6 bits (51), Expect = 0.77
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -1
Query: 441 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP 331
+ Y N Y N Y+ N + Y YY + Q+P
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIP 363
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 3.1
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Frame = +3
Query: 306 SVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYHICLLQLEHRPLHRPACI 485
S+ +I E SS + P C K S + +C+ + HRP C
Sbjct: 60 SIDRSSIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCA 119
Query: 486 ----VYTTRLLYHRS 518
+Y HR+
Sbjct: 120 SNGKIYANHCELHRA 134
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 4.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 58 FFLNVAIIFINETKVICTM 2
+FLN+A +F+ +IC M
Sbjct: 236 YFLNMASVFMRIFNLICMM 254
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 22.2 bits (45), Expect = 4.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 160 FRLPGFHFGSGRTVRHILGGRARKI 234
+ +P +GS + RH+L RK+
Sbjct: 52 YLMPNIGYGSNKKTRHMLPTGFRKV 76
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 22.2 bits (45), Expect = 4.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = -1
Query: 282 QDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 154
+DP R Y+W + S T ++P + + KR+
Sbjct: 419 RDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKRE 461
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 288 EANRFCSVANQTIQREPDFHHSSS 359
E+ ++ + +N R DF H+SS
Sbjct: 206 ESKKYATSSNSLRNRTHDFQHTSS 229
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 288 EANRFCSVANQTIQREPDFHHSSS 359
E+ ++ + +N R DF H+SS
Sbjct: 206 ESKKYATSSNSLRSRTHDFQHTSS 229
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 61 SFFLNVAIIFINETKVICTM 2
+ FLN+A +F+ +IC M
Sbjct: 267 TLFLNMASVFMRIFNLICMM 286
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 21.4 bits (43), Expect = 7.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 508 YKSLVV*TIQAGRCKGRCSSW 446
Y V I + C+GRCSS+
Sbjct: 40 YPGCVPKPIPSYACRGRCSSY 60
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 7.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 261 SGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 374
+ DD +P+ E S + I + P + +S+ C S
Sbjct: 860 TNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSS 897
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 278 IRVVPTTSGWRTTPKIFLAR 219
++V+PT +G +TT AR
Sbjct: 1256 LKVIPTPAGLKTTGAAVYAR 1275
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,698
Number of Sequences: 438
Number of extensions: 4683
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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