Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17j09
         (831 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB049659-1|BAC98466.1|  250|Homo sapiens legumaturain protein.         64   6e-10
BC021136-1|AAH21136.1|  250|Homo sapiens interferon, gamma-induc...    63   1e-09
AF097362-1|AAF04618.1|  261|Homo sapiens gamma-interferon induci...    63   1e-09
BC031020-1|AAH31020.1|  250|Homo sapiens interferon, gamma-induc...    63   1e-09
J03909-1|AAA36105.1|  303|Homo sapiens gamma-interferon-inducibl...    53   1e-06
AK123477-1|BAC85622.1|  148|Homo sapiens protein ( Homo sapiens ...    46   2e-04
U87223-1|AAB48481.1| 1384|Homo sapiens contactin associated prot...    31   5.1  

>AB049659-1|BAC98466.1|  250|Homo sapiens legumaturain protein.
          Length = 250

 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
 Frame = -3

Query: 643 VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSIN-NGGDGFECQHGP 467
           V ++++YE+ C   + F++ +L PT   + + +++ L+P+G A   N +G   F+CQHG 
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGE 121

Query: 466 PECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECVY 287
            EC  N ++ C L+E+        +  +  E E M  +      +    +  D + EC  
Sbjct: 122 EECKFNKVEACVLDELDMELAFLTIVCME-EFEDMERSLPLCLQLYAPGLSPDTIMECAM 180

Query: 286 LGPG-TLLQLDSERLTKLVNP-KFIPTIVLDG-VFDQATQNKAFNDLMGTICDRLRNVKP 116
              G  L+  +++R   L  P +++P + ++G   +  TQ      L+  +C   +  KP
Sbjct: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQ------LLALVCQLYQGKKP 234


>BC021136-1|AAH21136.1|  250|Homo sapiens interferon,
           gamma-inducible protein 30 protein.
          Length = 250

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
 Frame = -3

Query: 643 VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSIN-NGGDGFECQHGP 467
           V ++++YE+ C   + F++ +L PT   + + +++ L+P+G A   N +G   F+CQHG 
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGE 121

Query: 466 PECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECVY 287
            EC  N ++ C L+E+        +  +  E E M  +      +    +  D + EC  
Sbjct: 122 EECKFNKVEACVLDELDMELAFLTIVCME-EFEDMERSLPLCLQLYAPGLSPDTIMECAM 180

Query: 286 LGPG-TLLQLDSERLTKLVNP-KFIPTIVLDG 197
              G  L+  +++R   L  P +++P + ++G
Sbjct: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNG 212


>AF097362-1|AAF04618.1|  261|Homo sapiens gamma-interferon inducible
           lysosomal thiol reductase protein.
          Length = 261

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
 Frame = -3

Query: 643 VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSIN-NGGDGFECQHGP 467
           V ++++YE+ C   + F++ +L PT   + + +++ L+P+G A   N +G   F+CQHG 
Sbjct: 73  VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGE 132

Query: 466 PECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECVY 287
            EC  N ++ C L+E+        +  +  E E M  +      +    +  D + EC  
Sbjct: 133 EECKFNKVEACVLDELDMELAFLTIVCME-EFEDMERSLPLCLQLYAPGLSPDTIMECAM 191

Query: 286 LGPG-TLLQLDSERLTKLVNP-KFIPTIVLDG 197
              G  L+  +++R   L  P +++P + ++G
Sbjct: 192 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNG 223


>BC031020-1|AAH31020.1|  250|Homo sapiens interferon,
           gamma-inducible protein 30 protein.
          Length = 250

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
 Frame = -3

Query: 643 VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSIN-NGGDGFECQHGP 467
           V ++++YE+ C   + F++ +L PT   + + +++ L+P+G A   N +G   F+CQHG 
Sbjct: 62  VNVTLYYEALCGGCQAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGE 121

Query: 466 PECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECVY 287
            EC  N ++ C L+E+        +  +  E E M  +      +    +  D + EC  
Sbjct: 122 EECKFNKVEACVLDELDMELAFLTIVCME-EFEDMERSLPLCLQLYAPGLSPDTIMECAM 180

Query: 286 LGPG-TLLQLDSERLTKLVNP-KFIPTIVLDG 197
              G  L+  +++R   L  P +++P + ++G
Sbjct: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNG 212


>J03909-1|AAA36105.1|  303|Homo sapiens gamma-interferon-inducible
           protein precursor protein.
          Length = 303

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = -3

Query: 643 VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSIN-NGGDGFECQHGP 467
           V ++++YE+ C   + F++ +L PT   + + +++  +P+G A   N +G   F+CQ G 
Sbjct: 73  VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTSVPYGNAQEQNVSGRWEFKCQLGE 132

Query: 466 PECFGNLIQDCTLNEM 419
            EC  N ++ C L+E+
Sbjct: 133 EECKFNKVEACVLDEL 148


>AK123477-1|BAC85622.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41483 fis, clone BRTHA2002808, highly  similar
           to GAMMA-INTERFERON-INDUCIBLE PROTEIN IP-30 PRECURSOR.
           ).
          Length = 148

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = -3

Query: 553 DYIDLQLIPFGKASSINNGGDG-FECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLAC 377
           + +++ L+P+G A   N  G   F+CQHG  EC  N ++ C L+E+        +  +  
Sbjct: 2   EILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDELDMELAFLTIVCME- 60

Query: 376 EMETMASTRGDIQCIVKSNVPHDPVRECVYLGPG-TLLQLDSERLTKLVNP-KFIPTIVL 203
           E E M  +      +    +  D + EC     G  L+  +++R   L  P +++P + +
Sbjct: 61  EFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTV 120

Query: 202 DGV 194
           +GV
Sbjct: 121 NGV 123


>U87223-1|AAB48481.1| 1384|Homo sapiens contactin associated protein
           protein.
          Length = 1384

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 276 EHCCNWIPNA*RNSL---TQSSYPLSFWTGSSIRQH 178
           +HC  WI  +  NS    T   YP SFW G +  QH
Sbjct: 667 QHCEQWIEFSCYNSRLLNTAGGYPYSFWIGRNEEQH 702


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,107,000
Number of Sequences: 237096
Number of extensions: 2817360
Number of successful extensions: 5344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5339
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)