Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17j08
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 54 3e-08
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 53 4e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 44 3e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 42 8e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 36 0.005
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 35 0.015
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.57
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 1.00
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.7
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 28 1.7
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.3
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 5.3
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 5.3
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 7.0
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 7.0
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 9.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.3
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 606
ATWCGPCK I PK ++ + IA+E +++MP+F KNG+K++
Sbjct: 27 ATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIE 85
Query: 605 EFSGAN 588
E GAN
Sbjct: 86 EIVGAN 91
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKNGKKL 609
A WCGPCK I P ++A++ AS + +MPTFVF +NGK++
Sbjct: 28 ADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQI 87
Query: 608 DEFSGAN 588
D +GAN
Sbjct: 88 DMLTGAN 94
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKNGKKL 609
A WCG CK + P+ + A E+ SEY+I PT KNGK++
Sbjct: 48 APWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQI 107
Query: 608 DEFSG 594
++SG
Sbjct: 108 SQYSG 112
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 606
A WCG CK + P +++A E S +I+ PT +F K K++
Sbjct: 382 APWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKANDKVN 440
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 606
A WCGPCK + P L+++ +E IA + + ++PT V + G++LD
Sbjct: 44 ADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELD 102
Query: 605 EFSGANV 585
GA+V
Sbjct: 103 RIVGADV 109
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 606
A W PCK + D+ A + A +++N++P FV + K L
Sbjct: 29 APWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNAVPLFVLIHGAKVLA 87
Query: 605 EFSGAN 588
SGAN
Sbjct: 88 RISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXIASEYNINSMPTFV-FVKNGK 615
ATWCG CK + P +E+ A E +A +Y+I PT + F +G
Sbjct: 48 ATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGS 107
Query: 614 KLDEFSGA 591
+ ++S A
Sbjct: 108 EPVQYSNA 115
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -2
Query: 776 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 606
CG CK +GP D E A E ++S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 605 E 603
E
Sbjct: 114 E 114
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 1.00
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 431 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 520
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 426 SSNSLQTLKTFFIHLLKTYTCFFFLIP 506
SS +L +F+ L++ + CFFF+ P
Sbjct: 50 SSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = -2
Query: 785 ATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIA--SEYNINSMPTFVFVKNGKK 612
A WCG CK + P ++A+ + A S+Y + PT V K
Sbjct: 57 APWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSK 116
Query: 611 LDEFSGAN 588
S +
Sbjct: 117 GSSLSSTD 124
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 407 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 529
++ + N ++TD +NIF +F+ N + F + L I C
Sbjct: 71 KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 199 IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 288
+G I HL K D+N K ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 386 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 520
+F +++T K FI KNIF F +FF F IL SI
Sbjct: 84 WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 163 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 267
K DG+ S GE++H + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +2
Query: 368 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 547
+ T+ I+F + T + + + +++ F S ++N+ FF S G C+ L
Sbjct: 22 VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80
Query: 548 F 550
F
Sbjct: 81 F 81
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 151 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 306
KSF KH D L ++ S+ ++ KP KN N + HTL + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 417 KLISSNSLQTLKTFFIHLLKTY 482
KL+SSN+LQ + F+ ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 558 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG 734
F + +E+VD ++ + + F+ L + ++ GD + INV L + D +FGG
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGG 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,680
Number of Sequences: 5004
Number of extensions: 60352
Number of successful extensions: 191
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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