Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17j05
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 0.83
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 27 0.83
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 0.83
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 1.5
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 2.5
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 2.5
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 3.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 4.4
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 4.4
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 24 5.9
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.9
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 24 7.8
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 0.83
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 176 KHNYRLPLRVNLLFITINTIPLLVVRHVTSV 268
++N RLP N ++ TI +L V HVT V
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.1 bits (57), Expect = 0.83
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 82 IPKMYEVL*HPQVNLYYILPATRQYFCKPHHEAQLSSP 195
+ K++ VL HP +N L +YF K H+ P
Sbjct: 210 VTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 0.83
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 30 NKXTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 140
NK ++PP L+H + V GP T A PS
Sbjct: 34 NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 1.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 128 ITSFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 256
I +FPQ NI +H TK N L V F +T L V+H
Sbjct: 1029 INTFPQLFNILTTHATKDN----LTVKDCFPKDDTQQLAAVKH 1067
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 2.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 235 SITRCSSRNISCNNIFVQVFTCCLH*GRNCTVAVWW 342
S ++CS R +C I+ TCC+ G +C + W
Sbjct: 22 SASQCSPRYGTCGGIYYDGPTCCVV-GSSCIYSNPW 56
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 2.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 174 RSTTIVSLYE*ICYLLLSILFHY 242
R T+++SL +CYL+ +L+H+
Sbjct: 163 RHTSVISLIA-LCYLVFIVLYHF 184
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 209 LLFITINTIPLLVVRHVTSVVIIYLSKY 292
LL + INT PL + +I+++KY
Sbjct: 48 LLHVRINTSPLFIKTTTRPTALIHITKY 75
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 177 STTIVSLYE*ICYLLLSILFHYSLF 251
ST + LYE YL++ FHYS+F
Sbjct: 590 STPMSKLYE--DYLVMLFAFHYSMF 612
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 171 PRSTTIVSLYE*ICYLLLSILFHYSLFVT*HQL**YIC--PSIYVLSALR 314
P +I Y+ ICY +IL Y LF+ + IC P + + +R
Sbjct: 39 PNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFFPIKRIR 88
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 24.2 bits (50), Expect = 5.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 9 IRFNVXVNKXTYLSPPNKMLRHRNYPKNVRG---PLTPASKLVL 131
I F V V T+ + R +NYPK+ G P T + LVL
Sbjct: 38 ITFAVGVGSATFYTANYLDKRRKNYPKSSYGFPIPQTSSRSLVL 81
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 24.2 bits (50), Expect = 5.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -1
Query: 203 LVKGDDSCASWCGLQKYCL 147
+V D C WC ++CL
Sbjct: 510 VVNAPDLCGEWCDWYRHCL 528
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 42 YLSPPNKMLRHRNYPKNVRGPLTPASKLVLHP 137
Y + +K L H + P +++ TP+ VL P
Sbjct: 659 YHTSLSKSLEHSSTPASLQATKTPSPSFVLEP 690
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,661
Number of Sequences: 5004
Number of extensions: 29120
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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