Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17j05
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   9.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.6  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 182 CASWCGLQKYCLVAGRM*YKFTCGC*RTSYI 90
           C  +C  Q    VA    +   C C R SY+
Sbjct: 69  CEGFCNSQVQPSVASTTGFSKECYCCRESYL 99


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 182 CASWCGLQKYCLVAGRM*YKFTCGC*RTSYI 90
           C  +C  Q    VA    +   C C R SY+
Sbjct: 69  CEGFCNSQVQPSVASTTGFSKECYCCRESYL 99


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 57  NKMLRHRNYPKNVRGPLT 110
           NK   H NYP +  G LT
Sbjct: 582 NKRSIHNNYPVHTFGRLT 599


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 177 FVVWLTKILSCCGKDVIQVY 118
           F+ ++ K L CCG   +  Y
Sbjct: 135 FIDFIQKNLQCCGVHSLSDY 154


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +1

Query: 235 SITRCSSRNISCNNIF 282
           ++++C +RN++  N+F
Sbjct: 707 ALSKCHNRNVTTCNMF 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,342
Number of Sequences: 438
Number of extensions: 2032
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)