Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17j01
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.81 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   10.0 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   10.0 

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 YLIPSIFIFIYILNLLWTSTNNSRPKFAKSV 473
           Y+IP++ + +  L +LW  + ++    A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 556 RERLYTFLSIYIKMNCCSLVSLKLENGWTD 467
           RE  Y  + IYI   CC LV +   + W D
Sbjct: 239 REFSYYLIQIYIP--CCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 556 RERLYTFLSIYIKMNCCSLVSLKLENGWTD 467
           RE  Y  + IYI   CC LV +   + W D
Sbjct: 239 REFSYYLIQIYIP--CCMLVIVSWVSFWLD 266


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 YLIPSIFIFIYILNLLWTSTNNSR 452
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 297 LLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPS 395
           L  +  LK +K +RP  +       YC+ L P+
Sbjct: 195 LFMEETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 YLIPSIFIFIYILNLLWTSTNNSR 452
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 SNSFLYK*IRKYINVPLVY*IFENSY 585
           S + LY+   KY+  P +Y I+ N +
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYF 170


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 SNSFLYK*IRKYINVPLVY*IFENSY 585
           S + LY+   KY+  P +Y I+ N +
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYF 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,755
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)