Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17i22
         (126 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   5.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            19   5.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 93  NEFLERKXFXMXQFRRITMVPSRSS 19
           +E LER    + ++  I+  PS++S
Sbjct: 300 DEKLERNDLDLEKYEGISSTPSQAS 324


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 123  KKPIDVDHMNNEFLER 76
            KK IDV    NE+L++
Sbjct: 1379 KKKIDVRAKLNEYLDK 1394


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 49 KDHNGSL 29
          KDHNGS+
Sbjct: 32 KDHNGSI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,660
Number of Sequences: 438
Number of extensions: 217
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)