Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17i14
(509 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 119 7e-27
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 119 7e-27
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 119 7e-27
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 119 7e-27
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 93 5e-19
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 53 5e-07
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 53 5e-07
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 53 5e-07
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 46 8e-05
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 46 8e-05
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 46 8e-05
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.001
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.001
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 42 0.001
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 42 0.001
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 42 0.001
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 40 0.007
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 39 0.009
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 39 0.009
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 39 0.009
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 39 0.009
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 39 0.009
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 39 0.009
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 39 0.009
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 38 0.020
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 38 0.020
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 38 0.020
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 38 0.020
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 34 0.33
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 34 0.33
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 34 0.33
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 29 9.4
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 119 bits (286), Expect = 7e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 231
MSKAHPPELKKFMDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 230 VIRGXSXIMLESLD 189
VIRG S IMLE+L+
Sbjct: 61 VIRGNSIIMLEALE 74
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 93.1 bits (221), Expect = 5e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -1
Query: 374 MDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGXSXIMLES 195
MDKK S+ LN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMVVIRG S IMLE+
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 194 LD 189
L+
Sbjct: 61 LE 62
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 53.2 bits (122), Expect = 5e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Frame = -1
Query: 389 ELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 234
+L K++DK + GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 233 VVIRGXSXIML 201
VV RG S +++
Sbjct: 74 VVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 53.2 bits (122), Expect = 5e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Frame = -1
Query: 389 ELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 234
+L K++DK + GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 233 VVIRGXSXIML 201
VV RG S +++
Sbjct: 74 VVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 53.2 bits (122), Expect = 5e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Frame = -1
Query: 389 ELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 234
+L K++DK + GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 233 VVIRGXSXIML 201
VV RG S +++
Sbjct: 74 VVCRGTSVVLI 84
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 46.0 bits (104), Expect = 8e-05
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = -1
Query: 374 MDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGXSXIM 204
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG + ++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 203 LESLD 189
L +D
Sbjct: 74 LGEID 78
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 46.0 bits (104), Expect = 8e-05
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = -1
Query: 374 MDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGXSXIM 204
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG + ++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 203 LESLD 189
L +D
Sbjct: 74 LGEID 78
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 46.0 bits (104), Expect = 8e-05
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = -1
Query: 374 MDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGXSXIM 204
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG + ++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 203 LESLD 189
L +D
Sbjct: 74 LGEID 78
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.001
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = -1
Query: 386 LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 219
L+ ++++ ++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 218 XSXIMLESLD 189
+ ++ +D
Sbjct: 65 DNVAVIGEID 74
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.001
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = -1
Query: 386 LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 219
L+ ++++ ++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 218 XSXIMLESLD 189
+ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.001
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = -1
Query: 386 LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 219
L+ ++++ ++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 218 XSXIMLESLD 189
+ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.001
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = -1
Query: 386 LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 219
L+ ++++ ++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 218 XSXIMLESLD 189
+ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Frame = -1
Query: 341 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGXSXIML 201
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S +++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.5 bits (88), Expect = 0.007
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -1
Query: 386 LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 219
L+ ++++ ++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGXSXIMLESL 192
+ G + GFD +MNLVLD++ E K R +G ++++G + +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 37.9 bits (84), Expect = 0.020
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = -1
Query: 416 ITMSKAHPPE-LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 243
+++ K P + LK+ + + + LN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 242 VGMVVIRGXSXIMLES 195
G IRG + + + +
Sbjct: 60 YGDAFIRGNNVLYIST 75
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 37.9 bits (84), Expect = 0.020
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = -1
Query: 416 ITMSKAHPPE-LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 243
+++ K P + LK+ + + + LN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 242 VGMVVIRGXSXIMLES 195
G IRG + + + +
Sbjct: 60 YGDAFIRGNNVLYIST 75
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 37.9 bits (84), Expect = 0.020
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = -1
Query: 416 ITMSKAHPPE-LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 243
+++ K P + LK+ + + + LN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 242 VGMVVIRGXSXIMLES 195
G IRG + + + +
Sbjct: 60 YGDAFIRGNNVLYIST 75
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 37.9 bits (84), Expect = 0.020
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = -1
Query: 416 ITMSKAHPPE-LKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 243
+++ K P + LK+ + + + LN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 242 VGMVVIRGXSXIMLES 195
G IRG + + + +
Sbjct: 60 YGDAFIRGNNVLYIST 75
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -1
Query: 407 SKAHPPEL-KKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 240
S+ P EL K + + I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 239 GMVVIRGXSXIML 201
+++ G + ML
Sbjct: 70 DQILLNGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -1
Query: 407 SKAHPPEL-KKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 240
S+ P EL K + + I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 239 GMVVIRGXSXIML 201
+++ G + ML
Sbjct: 70 DQILLNGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -1
Query: 407 SKAHPPEL-KKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 240
S+ P EL K + + I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 239 GMVVIRGXSXIML 201
+++ G + ML
Sbjct: 70 DQILLNGNNITML 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 29.1 bits (62), Expect = 9.4
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = -1
Query: 410 MSKAHPPELKKFMDKKXSIXLNAGRAVTGVLRGFDPFMNLVL---DE-------SVEECK 261
M+ ++ + +D + L GR G + FD MNL+L DE + E+ +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 260 DGQRNNVGMVVIRGXSXIML 201
++ +G+V++RG + + +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,792,926
Number of Sequences: 237096
Number of extensions: 684901
Number of successful extensions: 748
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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