Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17i12
         (678 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032355-1|AAH32355.1|  732|Homo sapiens TTC12 protein protein.        30   8.7  
AK223117-1|BAD96837.1|  704|Homo sapiens Tetratricopeptide repea...    30   8.7  
AK023921-1|BAB14725.1|  705|Homo sapiens protein ( Homo sapiens ...    30   8.7  
AK000542-1|BAA91242.1|  680|Homo sapiens protein ( Homo sapiens ...    30   8.7  

>BC032355-1|AAH32355.1|  732|Homo sapiens TTC12 protein protein.
          Length = 732

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NLPRLRILHTLTLKIKPXVASCNATCMCEAITSHLGQE 380
           NLP +    T  LK  P V+S +A C C AI  +L  E
Sbjct: 424 NLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAE 461


>AK223117-1|BAD96837.1|  704|Homo sapiens Tetratricopeptide repeat
           protein 12 (TPR repeat protein 12) variant protein.
          Length = 704

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NLPRLRILHTLTLKIKPXVASCNATCMCEAITSHLGQE 380
           NLP +    T  LK  P V+S +A C C AI  +L  E
Sbjct: 423 NLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAE 460


>AK023921-1|BAB14725.1|  705|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13859 fis, clone THYRO1001033, weakly similar to
           TRANSFORMATION-SENSITIVE PROTEIN IEF SSP 3521. ).
          Length = 705

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NLPRLRILHTLTLKIKPXVASCNATCMCEAITSHLGQE 380
           NLP +    T  LK  P V+S +A C C AI  +L  E
Sbjct: 424 NLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAE 461


>AK000542-1|BAA91242.1|  680|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20535 fis, clone KAT11013. ).
          Length = 680

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NLPRLRILHTLTLKIKPXVASCNATCMCEAITSHLGQE 380
           NLP +    T  LK  P V+S +A C C AI  +L  E
Sbjct: 399 NLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAE 436


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,140,919
Number of Sequences: 237096
Number of extensions: 1686338
Number of successful extensions: 1883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)