Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17i04
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 289 PGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 185
           PG   ++GD  P Q  V  KV  P+      +LEN
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLEN 369


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 289 PGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 185
           PG   ++GD  P Q  V  KV  P+      +LEN
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLEN 369


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 384 LIRTRSRRGTNRFTALAISIFN*QNSKAKNMSTMNA 491
           +IR+RSRR + RF++  +   +  +S++ + S + +
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS 51


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 54  IWSCIFCEVLIL 19
           IWSC+F  +LIL
Sbjct: 375 IWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 54  IWSCIFCEVLIL 19
           IWSC+F  +LIL
Sbjct: 428 IWSCLFFFMLIL 439


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 464 F*ILLIKNRNGQCSKTIGSSSGPCP 390
           F  LL K RNG    T+ +++  CP
Sbjct: 289 FDCLLKKERNGPTQTTLNATTLFCP 313


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 464 F*ILLIKNRNGQCSKTIGSSSGPCP 390
           F  LL K RNG    T+ +++  CP
Sbjct: 379 FDCLLKKERNGPTQTTLNATTLFCP 403


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 112 LTCDSNSVSLVVACANEXVDMVVY 41
           L+C+ N  +LV    NE   +++Y
Sbjct: 191 LSCEVNGSTLVYIGDNEGFALIIY 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,120
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)