Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17i02
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   183   3e-47
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.4  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  183 bits (445), Expect = 3e-47
 Identities = 90/161 (55%), Positives = 115/161 (71%), Gaps = 1/161 (0%)
 Frame = -3

Query: 638 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGF 462
           +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGF 351

Query: 461 VFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLS 282
           + LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL 
Sbjct: 352 LILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLM 410

Query: 281 LNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 159
            N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 411 YNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = -2

Query: 816 PILYQHLF*FLGHPXSLYF*FLPGXGIISHIISQER-----GKKGNFW 688
           P+LYQHLF F GHP  +Y   +P  G++SHII         GK+G  W
Sbjct: 235 PVLYQHLFWFFGHP-EVYILIMPAFGVVSHIIPSLAHKPIFGKEGMLW 281


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 797 YFDFWDIPEVYIFNFYQDXV*FLILFHKKEEKKET 693
           Y  FW I + +++ F    +   ILF++ + K  T
Sbjct: 404 YSQFWAIFQAFVWRFLHSIIHAFILFYQSKSKAWT 438


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 294 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 166
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,401
Number of Sequences: 5004
Number of extensions: 41033
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)